Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.6e-123 446.0 219 100.0
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.3e-93 346.7 211 82.5
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 8.7e-69 264.2 229 55.5
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.1e-68 263.8 229 58.1
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.4e-68 261.2 229 58.1
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 1.3e-67 260.4 233 54.9
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 2.1e-67 259.6 231 56.7
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 2.4e-66 256.1 229 53.7
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 2.4e-66 256.1 229 53.7
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.1e-66 255.8 229 54.6
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 3.1e-66 255.8 230 56.1
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 9.0e-66 254.2 232 54.3
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 1.2e-65 253.8 233 56.7
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.2e-65 253.8 236 55.9
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 1.5e-65 253.4 230 54.8
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.0e-65 253.1 229 54.1
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 7.6e-65 251.1 229 55.9
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 2.2e-64 249.6 232 56.0
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 2.9e-64 249.2 225 56.0
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 3.8e-64 248.8 226 53.1
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 4.9e-64 248.4 221 54.3
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.9e-63 246.5 234 55.1
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 1.9e-63 246.5 232 55.6
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.2e-63 245.4 196 59.2
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 5.5e-63 245.0 230 53.0
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.1e-63 244.6 194 60.3
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 7.1e-63 244.6 194 60.3
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 9.3e-63 244.2 227 53.3
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 2.7e-62 242.7 223 52.5
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 3.5e-62 242.3 238 50.0
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 6.0e-62 241.5 194 58.8
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 1.3e-61 240.4 223 54.3
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 2.3e-61 239.6 231 49.8
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 2.3e-61 239.6 227 52.4
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 2.3e-61 239.6 229 50.2
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 3.9e-61 238.8 229 51.5
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 5.1e-61 238.4 217 53.5
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 5.1e-61 238.4 235 52.3
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 8.7e-61 237.7 185 60.5
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 8.7e-61 237.7 203 59.1
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 8.7e-61 237.7 227 51.5
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.9e-60 236.5 236 50.8
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.5e-60 236.1 238 51.3
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 2.5e-60 236.1 229 52.0
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 3.3e-60 235.7 238 50.0
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 7.4e-60 234.6 228 50.9
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 7.4e-60 234.6 239 52.3
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.3e-59 233.8 238 50.4
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 1.3e-59 233.8 227 49.8
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.6e-59 233.4 236 50.4
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 1.6e-59 233.4 227 51.1
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 2.8e-59 232.6 194 56.2
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 2.8e-59 232.6 232 52.6
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.8e-59 232.6 240 50.4
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 3.7e-59 232.3 240 48.8
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 4.8e-59 231.9 233 50.6
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 4.8e-59 231.9 219 51.1
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 6.3e-59 231.5 215 54.0
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 6.3e-59 231.5 199 52.3
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 6.3e-59 231.5 234 51.3
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 6.3e-59 231.5 194 55.7
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 6.3e-59 231.5 227 52.9
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 8.2e-59 231.1 190 60.5
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.4e-58 230.3 240 50.0
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 1.4e-58 230.3 221 52.9
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 3.1e-58 229.2 228 50.9
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.1e-58 229.2 194 55.7
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 3.1e-58 229.2 220 50.5
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 3.1e-58 229.2 220 50.5
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 4.1e-58 228.8 223 52.0
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 4.1e-58 228.8 220 52.7
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 5.3e-58 228.4 194 55.2
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 5.3e-58 228.4 194 55.2
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 5.3e-58 228.4 221 51.6
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 6.9e-58 228.0 220 50.0
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 6.9e-58 228.0 195 56.4
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 9.0e-58 227.6 194 55.2
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 1.5e-57 226.9 234 47.9
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 2.0e-57 226.5 194 54.6
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 2.0e-57 226.5 194 54.6
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 2.0e-57 226.5 235 50.6
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 2.6e-57 226.1 194 54.6
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 2.6e-57 226.1 230 48.3
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 2.6e-57 226.1 230 51.3
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 3.4e-57 225.7 220 50.5
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 3.4e-57 225.7 220 50.5
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 3.4e-57 225.7 194 54.1
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.4e-57 225.7 184 59.8
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 4.5e-57 225.3 194 54.1
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 7.6e-57 224.6 219 51.1
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 7.6e-57 224.6 260 45.4
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.0e-56 224.2 220 50.0
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 1.0e-56 224.2 234 46.6
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 1.3e-56 223.8 185 57.8
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.2e-56 223.0 193 57.5
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 2.2e-56 223.0 237 47.3
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 2.9e-56 222.6 226 47.8
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 5.0e-56 221.9 226 50.4
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 6.5e-56 221.5 196 54.6
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 8.5e-56 221.1 193 56.0
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 1.1e-55 220.7 238 48.7
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.1e-55 220.7 214 52.8
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 7.2e-55 218.0 236 47.0
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.1e-54 216.5 246 45.9
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.6e-54 215.7 247 47.0
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 4.6e-54 215.3 232 50.0
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 1.0e-53 214.2 190 57.9
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 1.3e-53 213.8 231 46.8
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.8e-53 213.4 228 45.2
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 2.3e-53 213.0 236 47.0
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.3e-53 213.0 215 48.8
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 3.9e-53 212.2 230 46.5
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 8.2e-51 204.5 253 42.3
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 3.8e-48 195.7 166 59.0
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 9.4e-47 191.0 188 49.5
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.1e-46 189.9 164 56.7
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 1.4e-45 187.2 252 43.7
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 1.4e-45 187.2 236 44.5
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 5.1e-45 185.3 190 50.0
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 6.7e-45 184.9 167 52.7
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 6.5e-40 168.3 170 51.2
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-39 167.2 161 51.6
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 5.5e-39 165.2 157 53.5
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.6e-38 163.7 171 53.2
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 4.8e-35 152.1 190 44.7
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 5.3e-34 148.7 237 36.7
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.0e-32 142.1 70 100.0
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.5e-32 141.7 112 56.2
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 6.1e-30 135.2 156 44.9
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 2.3e-29 133.3 118 51.7
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 5.2e-29 132.1 171 38.0
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 2.0e-28 130.2 225 34.2
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 7.5e-28 128.3 146 46.6
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 9.1e-26 121.3 129 50.4
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-21 107.8 125 45.6
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.8e-21 107.1 115 47.8
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.0e-21 106.3 124 44.4
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.0e-21 106.3 124 44.4
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 4.1e-18 95.9 157 31.8
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.8e-16 89.4 83 48.2
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 6.3e-11 72.0 69 49.3
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 4.5e-09 65.9 71 40.8
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 2.3e-08 63.5 196 24.5
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 8.6e-08 61.6 44 63.6
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.6e-06 57.4 135 32.6
Gohir.D04G053733 Gossypium hirsutum HOM05D004903 ORTHO05D036089 2.8e-06 56.6 57 54.4
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 2.8e-06 56.6 33 81.8


User provided reference genes

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