Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.6e-220 769.2 421 100.0
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.4e-152 543.5 394 69.0
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.7e-151 539.3 378 75.1
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 4.6e-151 538.5 372 74.5
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.5e-149 533.5 421 66.7
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.1e-147 527.3 419 66.3
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.4e-146 522.3 419 65.2
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 3.4e-146 522.3 419 65.4
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.9e-145 519.2 406 66.0
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.8e-145 518.8 419 64.9
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 4.9e-145 518.5 410 65.9
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 4.2e-144 515.4 412 65.0
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.0e-142 510.8 421 66.5
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.3e-142 510.4 425 64.0
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.8e-142 510.0 420 64.5
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.8e-142 510.0 425 63.3
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.3e-142 509.6 403 65.8
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.1e-142 508.4 425 62.8
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 8.7e-142 507.7 397 65.5
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 8.7e-142 507.7 408 64.7
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.9e-141 506.5 404 64.4
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 5.6e-141 505.0 395 66.1
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.3e-140 503.8 432 61.8
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.1e-139 500.7 397 66.2
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.4e-139 500.4 409 63.3
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 4.0e-139 498.8 385 67.3
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 5.3e-139 498.4 395 64.6
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.9e-139 498.0 393 64.9
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.2e-138 497.3 396 63.4
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.0e-138 496.5 393 64.6
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 5.8e-138 495.0 418 62.0
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 9.9e-138 494.2 413 64.4
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 2.2e-137 493.0 386 67.4
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 2.9e-137 492.7 426 62.0
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.9e-137 492.7 393 63.9
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 2.9e-137 492.7 408 62.3
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 2.9e-137 492.7 412 63.1
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 2.4e-136 489.6 421 63.4
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 2.4e-136 489.6 404 63.1
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.4e-136 489.6 424 61.8
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.2e-136 489.2 400 63.2
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.6e-135 486.9 416 61.5
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.1e-135 486.5 400 63.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.7e-135 486.1 409 63.1
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 4.6e-135 485.3 422 61.4
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.3e-134 483.0 389 66.6
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.3e-134 483.0 395 62.5
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.0e-134 482.6 381 68.8
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 5.1e-134 481.9 305 76.4
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 3.3e-133 479.2 391 63.4
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 5.6e-133 478.4 389 66.6
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 9.6e-133 477.6 419 59.7
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 3.7e-132 475.7 306 75.8
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 9.0e-131 471.1 412 60.4
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 9.0e-131 471.1 386 61.1
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 2.6e-130 469.5 397 62.0
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 3.4e-130 469.2 410 59.8
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 5.8e-130 468.4 423 58.6
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.2e-129 466.5 411 59.1
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.2e-129 466.5 412 60.2
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.9e-129 466.1 407 59.5
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.8e-129 465.7 412 59.0
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 6.5e-129 464.9 415 58.6
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.1e-128 464.2 412 58.7
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.9e-128 463.4 394 61.2
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.9e-128 463.4 413 58.1
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 2.5e-128 463.0 306 73.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.5e-128 463.0 412 58.5
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.2e-127 460.7 409 59.2
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-127 460.3 404 60.1
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.0e-126 457.6 319 69.6
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.3e-126 456.4 414 57.5
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 3.9e-126 455.7 378 63.8
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.1e-126 455.3 422 56.9
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.9e-125 453.4 400 58.0
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 1.9e-125 453.4 415 59.0
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.9e-125 453.4 377 61.0
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.7e-124 449.1 399 58.4
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 6.3e-124 448.4 397 59.9
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 6.3e-124 448.4 399 61.2
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.1e-123 447.6 411 58.2
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.8e-123 446.8 312 71.2
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.1e-123 446.0 384 61.2
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 3.4e-122 442.6 448 54.0
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 1.0e-121 441.0 406 60.3
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 1.7e-121 440.3 299 71.6
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.9e-121 439.5 398 58.3
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 3.8e-121 439.1 416 56.0
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.0e-121 438.7 419 55.8
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 6.5e-121 438.3 404 57.4
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 6.5e-121 438.3 406 60.1
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.1e-120 437.6 405 57.0
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-120 437.2 396 58.8
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.4e-120 437.2 384 60.9
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 1.4e-120 437.2 343 64.7
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.5e-120 436.4 398 58.8
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.6e-119 433.7 395 56.2
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.4e-118 430.6 407 56.0
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.3e-118 429.9 395 58.0
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 3.9e-118 429.1 324 66.7
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 3.9e-118 429.1 395 58.0
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.1e-117 427.6 419 54.7
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 2.5e-117 426.4 442 54.1
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.5e-117 426.4 409 55.7
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.3e-117 426.0 370 60.8
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 9.7e-117 424.5 308 66.6
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 4.8e-116 422.2 281 73.3
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-115 421.0 409 55.7
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.4e-115 420.6 404 54.7
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-115 419.9 410 55.4
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 2.4e-115 419.9 410 55.4
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 4.1e-115 419.1 409 55.5
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 5.3e-115 418.7 376 59.8
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 9.1e-115 417.9 381 57.7
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 3.4e-114 416.0 374 59.1
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 5.0e-113 412.1 421 52.3
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.1e-112 411.0 318 65.1
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.4e-112 410.6 383 56.9
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 6.1e-111 405.2 464 50.0
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.8e-110 403.7 373 57.9
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.1e-109 401.0 276 72.1
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.6e-106 389.8 426 49.5
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.0e-105 387.9 402 53.2
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 9.4e-104 381.3 428 53.3
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.6e-103 380.6 391 53.5
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 3.0e-102 376.3 299 61.5
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.1e-101 374.4 319 58.6
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.5e-98 362.8 232 75.9
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 4.5e-98 362.5 396 50.5
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.8e-97 359.4 339 56.3
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 6.5e-97 358.6 436 48.9
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.2e-96 355.9 394 50.5
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 1.0e-94 351.3 257 69.6
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 9.7e-93 344.7 331 54.4
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 4.5e-90 335.9 260 65.4
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 3.8e-89 332.8 310 53.5
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 7.2e-88 328.6 327 53.8
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 3.0e-86 323.2 365 50.1
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-85 320.1 368 50.0
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-84 317.0 369 49.3
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 3.8e-81 306.2 363 47.4
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 5.0e-81 305.8 363 47.4
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.1e-80 304.7 367 48.2
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.7e-79 299.3 396 44.2
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-77 293.1 394 45.2
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 4.9e-76 289.3 349 46.7
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 4.9e-76 289.3 349 47.9
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.5e-72 277.7 353 45.6
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 4.0e-70 269.6 251 57.0
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 5.0e-65 252.7 175 70.9
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.4e-59 232.6 323 42.7
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.2e-52 210.7 153 68.6
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 6.4e-52 209.1 125 79.2
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.5e-48 198.0 149 67.8
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 1.5e-48 198.0 149 67.8
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 9.5e-48 195.3 191 51.8
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.5e-40 170.6 145 66.2
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.8e-37 159.5 94 83.0
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 9.3e-35 152.1 166 49.4
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.2e-26 125.2 133 53.4
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 4.6e-26 123.2 119 51.3
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 2.5e-24 117.5 98 56.1
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 7.4e-24 115.9 111 53.2
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 7.4e-24 115.9 84 67.9
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-22 112.1 94 58.5
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 3.1e-22 110.5 94 56.4
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.2e-21 108.6 101 54.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 7.9e-18 95.9 251 32.3
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.8e-15 87.4 55 81.8
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 3.7e-15 87.0 172 34.3
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 6.9e-14 82.8 96 50.0
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 1.1e-11 75.5 92 43.5
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.9e-11 74.7 131 38.9
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 9.3e-11 72.4 54 55.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 9.3e-11 72.4 54 55.6
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.2e-10 72.0 93 45.2
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 4.6e-10 70.1 49 63.3
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 3.0e-09 67.4 92 40.2
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 5.1e-09 66.6 39 79.5
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.1e-09 66.6 131 37.4
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 5.3e-06 56.6 181 27.1
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 5.3e-06 56.6 55 52.7


User provided reference genes

Program Settings