Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.8e-63 245.7 125 100.0
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 2.7e-22 109.0 103 61.2
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 3.5e-22 108.6 89 67.4
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 6.0e-22 107.8 114 60.5
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 6.0e-22 107.8 87 69.0
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 6.0e-22 107.8 87 69.0
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 6.0e-22 107.8 87 66.7
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 7.8e-22 107.5 102 58.8
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.0e-21 107.1 87 69.0
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.0e-21 107.1 87 69.0
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.3e-21 106.7 103 59.2
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.7e-21 106.3 87 66.7
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.7e-21 106.3 89 65.2
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.7e-21 106.3 87 67.8
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.7e-21 106.3 87 66.7
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.3e-21 105.9 87 66.7
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 3.0e-21 105.5 89 65.2
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 3.0e-21 105.5 87 65.5
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.9e-21 105.1 102 58.8
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.9e-21 105.1 87 64.4
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 3.9e-21 105.1 89 64.0
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.9e-21 105.1 87 67.8
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 3.9e-21 105.1 94 62.8
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 3.9e-21 105.1 87 64.4
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 5.0e-21 104.8 103 58.3
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 5.0e-21 104.8 103 59.2
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 6.6e-21 104.4 87 65.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 6.6e-21 104.4 87 66.7
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 8.6e-21 104.0 87 65.5
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 8.6e-21 104.0 102 59.8
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 8.6e-21 104.0 89 64.0
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 8.6e-21 104.0 89 64.0
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.1e-20 103.6 87 65.5
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.1e-20 103.6 87 66.7
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.1e-20 103.6 87 64.4
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.1e-20 103.6 87 64.4
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.1e-20 103.6 87 64.4
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.9e-20 102.8 87 65.5
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.9e-20 102.8 103 59.2
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.5e-20 102.4 87 63.2
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 2.5e-20 102.4 87 66.7
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 2.5e-20 102.4 87 65.5
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 3.3e-20 102.1 87 60.9
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 3.3e-20 102.1 116 53.4
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.3e-20 102.1 94 59.6
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 3.3e-20 102.1 100 57.0
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 3.3e-20 102.1 109 55.0
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 4.3e-20 101.7 87 64.4
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 4.3e-20 101.7 87 65.5
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.3e-20 101.7 75 69.3
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.3e-20 101.7 75 69.3
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 4.3e-20 101.7 75 69.3
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 5.6e-20 101.3 87 63.2
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 5.6e-20 101.3 87 63.2
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 5.6e-20 101.3 89 62.9
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 5.6e-20 101.3 87 65.5
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 5.6e-20 101.3 102 59.8
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 7.3e-20 100.9 87 63.2
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 7.3e-20 100.9 89 61.8
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 9.5e-20 100.5 87 64.4
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 9.5e-20 100.5 87 64.4
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 9.5e-20 100.5 87 64.4
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 9.5e-20 100.5 94 60.6
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.2e-19 100.1 89 61.8
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 1.2e-19 100.1 87 59.8
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.2e-19 100.1 75 69.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.2e-19 100.1 87 63.2
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.2e-19 100.1 102 57.8
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.2e-19 100.1 103 58.3
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.6e-19 99.8 87 62.1
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.6e-19 99.8 102 58.8
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 1.6e-19 99.8 87 64.4
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 1.6e-19 99.8 87 63.2
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.1e-19 99.4 87 60.9
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 2.1e-19 99.4 87 63.2
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 2.8e-19 99.0 103 58.3
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.6e-19 98.6 87 62.1
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.6e-19 98.6 90 60.0
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 3.6e-19 98.6 87 63.2
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 3.6e-19 98.6 87 62.1
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 4.7e-19 98.2 87 64.4
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 6.2e-19 97.8 87 62.1
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 8.0e-19 97.4 87 62.1
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 8.0e-19 97.4 89 60.7
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 8.0e-19 97.4 89 60.7
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.1e-18 97.1 88 60.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 1.4e-18 96.7 76 68.4
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.4e-18 96.7 87 62.1
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.8e-18 96.3 87 62.1
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 2.3e-18 95.9 87 62.1
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 2.3e-18 95.9 103 56.3
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.1e-18 95.5 87 60.9
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 3.1e-18 95.5 87 60.9
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.1e-18 95.5 87 62.1
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 4.0e-18 95.1 88 59.1
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 4.0e-18 95.1 87 59.8
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 5.2e-18 94.7 87 60.9
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 5.2e-18 94.7 88 59.1
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 5.2e-18 94.7 87 59.8
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 5.2e-18 94.7 89 61.8
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 6.8e-18 94.4 87 59.8
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 6.8e-18 94.4 89 60.7
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 8.9e-18 94.0 87 58.6
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 8.9e-18 94.0 89 57.3
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 8.9e-18 94.0 83 60.2
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 8.9e-18 94.0 88 55.7
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.2e-17 93.6 87 58.6
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 2.6e-17 92.4 88 53.4
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.6e-17 92.4 88 53.4
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.6e-17 92.4 88 53.4
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.4e-17 92.0 88 53.4
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.5e-17 90.9 88 54.5
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.5e-17 90.9 88 53.4
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.5e-17 90.9 88 53.4
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 7.5e-17 90.9 87 57.5
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 9.8e-17 90.5 67 68.7
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 1.7e-16 89.7 67 68.7
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.7e-16 89.7 67 68.7
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.7e-16 89.7 67 68.7
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 2.9e-16 89.0 66 68.2
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.7e-16 88.6 89 55.1
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 4.9e-16 88.2 89 55.1
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-15 87.0 90 54.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.9e-15 86.3 58 72.4
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-14 83.6 75 57.3
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-14 83.6 80 56.2
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.2e-14 83.6 87 54.0
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 2.7e-14 82.4 69 58.0
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.7e-13 79.7 75 53.3
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 4.7e-11 71.6 89 44.9
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 7.5e-09 64.3 75 44.0
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 3.7e-08 62.0 75 56.0
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 3.2e-07 58.9 62 56.5
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 3.5e-06 55.5 28 85.7


User provided reference genes

Program Settings