Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 0.0e+00 1337.4 697 100.0
CDE03G0301 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.6e-185 652.5 631 62.1
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.4e-40 171.4 420 33.3
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.0e-38 164.5 470 32.3
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.5e-37 161.4 317 36.0
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 7.4e-37 159.8 430 31.4
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.3e-36 159.1 299 36.8
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 6.9e-35 153.3 420 32.1
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 9.0e-35 152.9 348 32.8
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 5.8e-34 150.2 334 34.7
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 8.4e-33 146.4 284 35.2
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.1e-32 146.0 383 32.9
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 8.7e-30 136.3 335 34.9
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.5e-29 135.6 335 33.1
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.5e-29 135.6 266 36.8
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 4.3e-29 134.0 303 35.0
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 5.6e-29 133.7 398 31.2
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 7.4e-29 133.3 340 34.4
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.3e-28 132.5 309 34.0
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 3.7e-28 131.0 319 34.5
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 4.8e-28 130.6 339 31.6
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.8e-28 130.6 343 31.8
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 8.2e-28 129.8 298 34.6
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 1.1e-27 129.4 221 39.8
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.4e-27 129.0 173 42.8
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 1.4e-27 129.0 343 34.4
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.4e-27 129.0 284 34.5
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.8e-27 128.6 365 31.5
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.4e-27 128.3 326 31.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.1e-27 127.9 289 33.9
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.0e-27 127.5 384 31.2
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 4.0e-27 127.5 313 34.5
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 4.0e-27 127.5 301 35.2
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 4.0e-27 127.5 290 35.9
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 4.0e-27 127.5 310 34.5
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 5.3e-27 127.1 330 33.0
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 6.9e-27 126.7 279 36.9
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 9.0e-27 126.3 270 37.4
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.2e-26 125.9 364 32.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.5e-26 125.6 289 35.3
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.0e-26 125.2 404 31.7
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.4e-26 124.4 246 35.8
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 3.4e-26 124.4 289 34.6
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.3e-25 122.5 330 32.1
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.3e-25 122.5 330 32.1
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.3e-25 122.5 374 30.7
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 3.8e-25 120.9 274 33.9
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 4.9e-25 120.6 267 34.5
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 6.5e-25 120.2 390 30.3
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.1e-24 119.4 340 31.5
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.1e-24 119.4 276 37.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.4e-24 119.0 423 28.4
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 5.5e-24 117.1 297 34.0
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 5.5e-24 117.1 395 29.1
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 5.5e-24 117.1 331 30.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 5.5e-24 117.1 292 34.2
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 7.1e-24 116.7 298 33.9
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 9.3e-24 116.3 393 29.0
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 9.3e-24 116.3 292 34.2
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.2e-23 115.9 309 33.0
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 2.1e-23 115.2 317 34.1
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 2.7e-23 114.8 328 30.2
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 2.7e-23 114.8 290 32.1
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 3.5e-23 114.4 379 31.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 7.9e-23 113.2 424 30.0
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 7.9e-23 113.2 327 30.9
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.8e-22 112.1 408 29.2
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 2.3e-22 111.7 322 32.0
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.0e-22 111.3 353 29.5
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 3.9e-22 110.9 270 34.1
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 3.9e-22 110.9 232 37.9
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.7e-22 110.2 378 27.5
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 8.7e-22 109.8 210 36.2
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.1e-21 109.4 284 31.7
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.5e-21 109.0 353 29.2
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.5e-21 109.0 353 29.2
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 1.9e-21 108.6 269 32.3
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 7.4e-21 106.7 316 30.1
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 9.7e-21 106.3 351 30.5
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.3e-20 105.9 202 36.1
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.8e-20 104.8 312 32.4
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.8e-20 104.8 424 28.1
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.7e-20 104.4 327 29.4
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 4.8e-20 104.0 281 30.2
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.8e-20 104.0 221 36.7
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 8.2e-20 103.2 672 25.0
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.4e-19 102.4 285 32.6
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.8e-19 102.1 176 39.8
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.1e-19 100.9 325 29.5
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.1e-19 100.9 273 34.4
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 9.0e-19 99.8 323 29.4
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.2e-18 99.4 225 36.4
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 1.2e-18 99.4 328 29.3
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.5e-18 99.0 371 30.2
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.5e-18 99.0 371 30.2
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.0e-18 98.6 281 33.1
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.6e-18 98.2 285 33.0
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 2.6e-18 98.2 145 42.8
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.6e-18 98.2 377 30.0
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 3.4e-18 97.8 198 35.4
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 4.5e-18 97.4 258 34.1
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.5e-18 97.4 247 35.6
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.5e-18 97.4 368 30.4
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 4.5e-18 97.4 283 30.7
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 5.9e-18 97.1 198 34.8
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.7e-17 95.5 300 32.0
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.7e-17 95.5 325 28.9
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.8e-17 94.4 253 34.0
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.8e-17 94.4 278 34.2
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 3.8e-17 94.4 246 31.3
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 5.0e-17 94.0 348 30.5
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.4e-16 92.4 344 29.4
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.4e-16 92.4 290 30.0
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 2.5e-16 91.7 130 46.2
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 2.5e-16 91.7 130 46.2
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 3.2e-16 91.3 147 39.5
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.2e-16 90.9 305 31.1
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 5.5e-16 90.5 295 30.8
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 5.5e-16 90.5 193 32.6
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 7.2e-16 90.1 297 30.6
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 9.4e-16 89.7 154 39.0
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 1.2e-15 89.4 315 29.5
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.6e-15 89.0 197 32.5
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.6e-15 89.0 261 32.2
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.6e-15 89.0 275 30.5
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.6e-15 89.0 251 31.1
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-15 88.6 376 29.0
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 2.1e-15 88.6 300 29.3
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 3.6e-15 87.8 374 28.6
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 3.6e-15 87.8 375 28.5
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 4.6e-15 87.4 245 30.6
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 6.1e-15 87.0 653 23.7
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 7.9e-15 86.7 146 38.4
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 7.9e-15 86.7 146 38.4
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 7.9e-15 86.7 146 38.4
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-14 86.3 160 38.8
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.0e-14 86.3 205 37.6
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.8e-14 85.5 291 31.3
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.8e-14 85.5 545 24.6
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 6.7e-14 83.6 279 30.1
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 8.8e-14 83.2 299 28.8
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-13 82.4 273 30.0
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.5e-13 82.4 273 30.0
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 2.5e-13 81.6 159 37.1
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 3.3e-13 81.3 212 35.4
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 3.3e-13 81.3 211 32.7
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.3e-13 81.3 182 35.2
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 4.3e-13 80.9 269 29.7
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 4.3e-13 80.9 159 36.5
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 9.7e-13 79.7 212 30.7
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 1.3e-12 79.3 297 27.3
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 2.8e-12 78.2 263 30.4
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.8e-12 78.2 239 28.9
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 4.8e-12 77.4 263 30.4
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.8e-11 75.5 664 22.3
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 5.3e-11 73.9 401 27.9
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 6.9e-11 73.6 634 23.3
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 3.4e-10 71.2 157 35.0
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.0e-09 69.7 386 26.2
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-09 68.9 305 26.9
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 5.5e-08 63.9 137 36.5
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 9.4e-08 63.2 175 30.9
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.3e-06 58.5 66 47.0
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 3.9e-06 57.8 582 23.9
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 8.8e-06 56.6 359 26.2


User provided reference genes

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