Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 0.0e+00 1288.9 828 100.0
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 7.3e-209 731.5 626 78.4
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.7e-202 710.3 796 59.2
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.6e-54 218.8 626 29.2
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.3e-53 214.9 408 34.8
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 6.7e-53 213.4 408 34.6
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.6e-51 208.8 408 34.1
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 9.3e-47 193.0 444 32.4
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.7e-44 183.7 451 31.3
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 2.8e-43 181.4 410 31.2
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 3.7e-43 181.0 478 30.8
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 6.3e-43 180.3 361 32.4
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.4e-42 179.1 596 38.3
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 2.4e-42 178.3 612 32.7
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.4e-42 178.3 449 30.3
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 5.3e-42 177.2 591 32.8
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 7.6e-41 173.3 426 31.5
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.0e-40 172.9 409 32.0
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.1e-39 169.5 417 30.0
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 5.5e-39 167.2 581 34.1
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 9.3e-39 166.4 431 29.2
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 9.3e-39 166.4 450 28.2
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.7e-38 164.9 607 34.3
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.0e-37 162.9 410 29.5
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.3e-37 162.5 418 29.4
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 5.1e-37 160.6 457 27.4
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 8.7e-37 159.8 439 29.4
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 8.7e-37 159.8 470 28.5
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 3.3e-36 157.9 423 28.4
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.6e-35 155.6 415 28.4
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 4.8e-35 154.1 417 29.3
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 4.8e-35 154.1 335 36.7
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.4e-34 152.5 410 28.8
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 4.1e-34 151.0 391 31.5
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 6.9e-34 150.2 449 26.9
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 7.7e-33 146.7 341 31.1
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.3e-32 146.0 441 28.6
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.5e-32 143.3 601 29.0
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.1e-31 142.9 442 28.5
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.4e-31 142.5 432 28.9
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 9.4e-31 139.8 448 27.2
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 1.2e-30 139.4 458 26.9
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 3.0e-29 134.8 588 32.0
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.1e-28 132.9 387 28.7
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.1e-28 132.9 451 27.3
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 3.3e-28 131.3 438 27.2
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 3.3e-28 131.3 453 26.0
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 9.7e-28 129.8 381 28.1
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 9.7e-28 129.8 590 38.5
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.3e-27 129.4 322 28.9
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.3e-27 129.4 409 27.1
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 3.7e-27 127.9 414 25.1
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 8.2e-27 126.7 418 26.1
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.4e-26 125.2 594 37.9
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 3.1e-26 124.8 408 27.5
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 5.3e-26 124.0 418 26.8
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 9.1e-26 123.2 414 27.8
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 2.6e-25 121.7 409 25.9
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 3.4e-25 121.3 449 25.2
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 4.5e-25 120.9 436 24.5
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 5.9e-25 120.6 425 24.2
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.7e-24 119.0 655 24.0
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 5.0e-24 117.5 395 25.6
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 8.5e-24 116.7 453 25.6
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 8.5e-24 116.7 418 27.3
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 8.5e-24 116.7 603 38.3
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.5e-23 115.2 453 28.5
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 3.2e-23 114.8 419 25.3
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 3.2e-23 114.8 630 22.1
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 4.2e-23 114.4 305 28.9
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 5.5e-23 114.0 304 28.6
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 7.2e-23 113.6 435 23.9
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.2e-22 112.8 409 25.4
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 2.7e-22 111.7 577 23.2
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 4.7e-22 110.9 345 27.2
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 7.9e-22 110.2 607 23.2
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.0e-21 109.8 402 26.4
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.4e-21 109.4 446 24.2
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.4e-21 109.4 304 28.0
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.8e-21 109.0 429 24.7
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 2.3e-21 108.6 451 23.9
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.5e-20 105.9 363 27.8
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.6e-20 105.1 435 22.8
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 2.6e-20 105.1 435 22.8
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.6e-20 105.1 435 22.8
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 2.6e-20 105.1 404 25.7
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.7e-19 102.4 164 39.6
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 2.2e-19 102.1 476 23.9
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 4.8e-19 100.9 407 24.6
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.1e-18 99.8 585 32.3
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.1e-18 99.8 484 22.7
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 4.1e-18 97.8 440 23.4
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 4.1e-18 97.8 226 30.1
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 5.3e-18 97.4 427 26.5
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 7.0e-18 97.1 410 23.4
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.2e-17 96.3 304 26.6
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 5.0e-16 90.9 298 26.5
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 7.2e-15 87.0 313 23.3
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 9.4e-15 86.7 601 33.9
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 2.1e-14 85.5 373 23.9
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 4.7e-14 84.3 194 33.0
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 8.0e-14 83.6 128 39.1
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 8.0e-14 83.6 239 25.9
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 1.0e-13 83.2 151 36.4
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.8e-13 82.4 407 22.1
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 3.0e-13 81.6 420 21.4
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.1e-12 79.7 433 23.1
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.5e-12 79.3 436 21.6
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.7e-12 77.4 421 22.3
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 1.7e-11 75.9 411 21.7
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 2.8e-11 75.1 329 23.7
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.8e-11 74.3 422 22.3
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 8.2e-11 73.6 419 22.4
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 8.2e-11 73.6 409 22.0
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.1e-10 73.2 442 22.2
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.1e-10 73.2 442 22.2
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.4e-10 72.8 503 22.3
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 2.4e-10 72.0 176 30.7
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 3.1e-10 71.6 429 20.7
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 3.1e-10 71.6 414 20.0
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 7.0e-10 70.5 143 35.7
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 7.0e-10 70.5 409 21.0
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 7.0e-10 70.5 115 43.5
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.2e-09 69.7 129 34.1
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 3.5e-09 68.2 458 21.6
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 3.8e-08 64.7 106 36.8
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.5e-08 63.9 145 31.7
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 6.5e-08 63.9 97 38.1
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 8.5e-08 63.5 345 22.9
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.1e-07 63.2 459 20.7
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.5e-07 62.8 98 34.7
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 3.2e-07 61.6 410 20.5
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.2e-07 61.6 128 36.7
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 4.2e-07 61.2 426 20.0
CDE07G0275 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 9.4e-07 60.1 146 37.7
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.2e-06 59.7 448 19.6
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 4.7e-06 57.8 118 33.1


User provided reference genes

Program Settings