Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.9e-111 404.8 206 100.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.0e-87 327.0 202 78.7
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 5.1e-87 324.7 198 79.8
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.3e-86 321.6 202 78.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 5.6e-86 321.2 209 76.6
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.3e-85 320.1 202 77.2
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.6e-85 319.7 190 80.5
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.2e-85 317.8 205 76.6
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 8.2e-85 317.4 205 76.1
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.1e-84 317.0 205 76.6
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.1e-84 317.0 205 76.6
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.1e-84 317.0 207 76.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.1e-84 317.0 205 77.1
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.8e-84 316.2 202 77.2
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.8e-84 316.2 190 78.9
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 3.1e-84 315.5 202 77.2
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.1e-84 315.5 205 76.1
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 5.3e-84 314.7 205 75.1
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 6.9e-84 314.3 206 76.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 6.9e-84 314.3 205 75.6
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 9.0e-84 313.9 207 75.4
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 2.0e-83 312.8 190 78.9
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 2.0e-83 312.8 205 75.1
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 3.4e-83 312.0 207 74.4
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 3.4e-83 312.0 207 74.9
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 4.5e-83 311.6 205 75.1
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 5.8e-83 311.2 207 75.8
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 7.6e-83 310.8 205 74.6
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 7.6e-83 310.8 205 75.1
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.0e-82 310.5 205 74.1
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.0e-82 310.5 195 77.9
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.7e-82 309.7 204 74.0
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.7e-82 309.7 205 75.6
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.9e-82 308.9 202 73.8
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 3.8e-82 308.5 202 75.2
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 3.8e-82 308.5 190 78.4
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 4.9e-82 308.1 208 76.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 6.5e-82 307.8 192 76.6
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 8.4e-82 307.4 190 77.9
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 1.1e-81 307.0 207 73.4
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.1e-81 307.0 204 73.5
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.1e-81 307.0 205 75.1
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.1e-81 307.0 231 68.8
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.4e-81 306.6 190 77.9
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 1.9e-81 306.2 202 74.3
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.9e-81 306.2 190 77.9
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.5e-81 305.8 190 77.4
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.2e-81 305.4 205 73.2
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 5.5e-81 304.7 190 77.4
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 5.5e-81 304.7 190 76.8
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 5.5e-81 304.7 205 73.7
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 7.1e-81 304.3 182 80.8
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 7.1e-81 304.3 195 75.9
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 7.1e-81 304.3 203 73.9
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 7.1e-81 304.3 190 77.4
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 9.3e-81 303.9 204 73.5
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 9.3e-81 303.9 190 78.4
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.6e-80 303.1 205 72.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.1e-80 302.8 190 76.3
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.7e-80 302.4 209 70.8
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 2.7e-80 302.4 208 72.1
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 4.6e-80 301.6 222 69.4
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.9e-80 300.8 209 70.8
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.8e-79 299.7 205 71.2
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 2.3e-79 299.3 188 76.1
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.3e-79 299.3 199 73.9
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 2.3e-79 299.3 208 71.6
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 3.9e-79 298.5 204 71.1
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 5.1e-79 298.1 202 72.3
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 5.1e-79 298.1 188 76.6
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 6.7e-79 297.7 202 71.8
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 6.7e-79 297.7 189 75.7
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 8.7e-79 297.4 209 72.2
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.1e-78 297.0 205 73.7
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.5e-78 296.6 205 71.2
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.9e-78 296.2 202 72.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.9e-78 296.2 202 71.8
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 1.9e-78 296.2 202 72.3
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 1.9e-78 296.2 202 71.8
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 2.5e-78 295.8 202 71.3
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.5e-78 295.8 209 69.4
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 3.3e-78 295.4 202 71.3
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 4.3e-78 295.0 202 70.3
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 4.3e-78 295.0 190 74.2
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 7.4e-78 294.3 185 76.2
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 7.4e-78 294.3 207 72.0
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 9.7e-78 293.9 205 69.3
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 9.7e-78 293.9 205 69.3
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 9.7e-78 293.9 205 69.3
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.3e-77 293.5 202 69.8
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.8e-77 292.4 202 71.8
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 2.8e-77 292.4 205 70.7
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 3.7e-77 292.0 185 75.1
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.7e-77 292.0 202 70.3
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 3.7e-77 292.0 207 71.0
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.1e-76 290.4 202 69.3
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.1e-76 290.4 188 74.5
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.1e-76 290.4 202 70.8
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.4e-76 289.3 242 63.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 3.1e-76 288.9 225 66.7
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 4.1e-76 288.5 205 70.7
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.3e-76 288.1 207 70.0
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 3.4e-75 285.4 237 63.3
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 3.4e-75 285.4 181 75.1
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 4.5e-75 285.0 188 73.9
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.6e-75 284.3 207 69.1
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.9e-74 282.3 189 69.8
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.0e-74 281.6 205 69.8
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 5.0e-74 281.6 182 73.1
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 8.5e-74 280.8 189 73.0
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.1e-73 280.4 190 73.2
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 3.2e-73 278.9 190 74.2
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.1e-72 276.2 202 69.8
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 3.0e-71 272.3 279 54.5
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 3.9e-71 271.9 193 67.4
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.3e-70 268.5 199 62.8
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.3e-69 266.9 163 79.1
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 4.8e-69 265.0 185 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.1e-68 263.8 195 62.1
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.8e-66 255.4 209 63.6
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 3.9e-63 245.4 181 64.6
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 8.2e-61 237.7 205 61.0
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.0e-58 230.7 207 57.0
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 2.9e-58 229.2 190 60.5
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 7.9e-56 221.1 198 60.1
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.1e-52 210.7 370 37.8
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.6e-51 206.8 183 54.1
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 3.2e-49 199.1 182 51.6
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 3.2e-49 199.1 182 51.6
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 4.7e-48 195.3 121 76.9
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 3.0e-47 192.6 201 54.7
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.8e-39 164.9 195 41.5
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-38 164.1 193 43.0
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.0e-38 163.3 208 40.4
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.4e-38 162.5 99 79.8
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 3.7e-37 159.1 102 76.5
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.1e-36 155.6 97 78.4
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 7.7e-35 151.4 102 71.6
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 2.5e-33 146.4 104 71.2
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.0e-31 141.0 113 66.4
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 2.3e-31 139.8 93 72.0
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 8.9e-31 137.9 94 67.0
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.2e-29 133.3 81 76.5
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 7.8e-27 124.8 102 64.7
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.8e-24 116.3 72 79.2
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 2.4e-20 103.2 68 70.6
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 4.6e-19 99.0 71 60.6
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 6.0e-19 98.6 59 84.7
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.1e-17 94.4 59 78.0
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 8.9e-15 84.7 70 62.9
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 4.4e-14 82.4 51 74.5
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.2e-08 64.3 176 32.4


User provided reference genes

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