Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1660.6 800 100.0
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1157.5 838 66.8
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 835 65.7
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1117.8 831 65.0
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1114.4 832 65.5
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1108.6 831 64.9
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1106.7 828 64.6
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1102.8 831 64.0
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1102.0 835 63.6
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1099.0 836 63.4
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1095.9 828 64.9
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1094.7 832 63.8
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1094.3 834 63.3
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1093.6 832 63.5
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1092.0 816 65.1
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1091.3 835 63.1
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1090.9 833 63.3
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1089.3 839 62.2
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1088.9 834 64.5
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1088.2 835 63.1
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1088.2 833 63.3
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1088.2 834 63.4
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1087.4 833 63.1
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1086.2 830 63.1
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1085.5 839 62.3
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1084.7 832 62.7
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1084.3 830 63.0
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1083.9 837 63.4
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1083.9 829 62.1
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1083.6 833 62.9
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1082.4 833 63.4
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1082.4 826 62.8
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1082.0 833 63.0
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1082.0 827 62.5
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1081.6 833 62.7
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1081.2 835 62.4
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1080.5 832 62.9
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1079.3 827 62.6
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1078.9 828 62.8
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1078.5 831 63.9
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1077.8 827 62.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1077.8 832 62.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1076.6 831 63.9
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1076.6 831 63.8
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 5.5e-312 1073.9 827 63.2
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 5.5e-312 1073.9 832 62.3
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 5.5e-312 1073.5 828 63.2
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.1e-311 1072.8 835 63.5
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 2.2e-311 1072.0 827 62.5
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 6.6e-311 1070.5 837 63.2
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.1e-310 1069.7 838 61.7
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 5.4e-310 1067.4 837 63.2
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 7.1e-310 1067.0 831 61.6
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 7.1e-310 1067.0 837 62.4
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 1.2e-309 1066.2 826 62.3
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 1.6e-309 1065.8 826 62.2
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 2.1e-309 1065.4 831 62.6
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 2.7e-309 1065.1 834 62.9
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 3.5e-309 1064.7 833 61.2
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 1.0e-308 1063.1 831 63.1
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 1.1e-307 1059.7 821 61.4
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 1.1e-307 1059.7 833 61.6
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 1.9e-307 1058.9 838 61.7
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 5.6e-307 1057.4 834 61.9
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 6.8e-305 1050.4 961 55.8
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 3.4e-304 1048.1 826 61.3
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.4e-302 1042.7 846 60.9
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 2.1e-301 1038.9 846 60.2
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 4.3e-299 1031.2 870 58.6
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 2.8e-298 1028.5 853 59.8
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 1.8e-297 1025.8 832 60.7
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 1.8e-297 1025.8 833 59.4
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 5.2e-297 1024.2 831 61.4
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.6e-296 1020.4 779 64.6
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 5.4e-294 1014.2 832 60.0
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 2.1e-293 1012.3 827 60.3
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 2.3e-292 1008.8 795 62.9
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 3.2e-286 988.4 833 57.6
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 2.1e-285 985.7 834 59.1
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 1.8e-284 982.6 840 57.0
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 2.3e-284 982.2 760 62.5
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.1e-283 979.9 834 57.7
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 9.0e-281 970.3 834 57.0
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.2e-280 969.9 730 65.1
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 2.0e-280 969.1 830 57.5
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 4.5e-280 968.0 828 57.4
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 6.4e-279 964.1 827 57.3
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 8.4e-279 963.8 828 57.2
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 8.4e-279 963.8 829 57.3
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 4.2e-278 961.4 936 52.6
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 1.2e-277 959.9 827 57.1
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 7.9e-277 957.2 835 56.3
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 2.3e-276 955.7 828 56.5
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 3.9e-276 954.9 834 56.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 2.5e-275 952.2 831 56.1
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 2.1e-274 949.1 836 56.3
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.6e-251 872.5 828 53.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.5e-246 855.9 669 62.9
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.0e-240 836.3 784 53.3
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.5e-232 808.9 572 67.7
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 5.0e-223 778.5 638 60.2
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 9.8e-219 764.2 887 45.2
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 5.8e-211 738.4 848 46.7
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.5e-206 723.8 854 44.8
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 9.9e-187 657.9 791 47.3
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.2e-152 544.7 464 57.1
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 3.9e-143 513.1 363 68.3
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.0e-131 474.2 355 60.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.0e-126 457.6 372 61.0
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.0e-103 380.6 360 52.5
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.4e-92 344.4 303 55.1
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-86 325.5 235 65.1
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.2e-85 321.2 263 60.1
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 3.7e-85 320.5 704 34.8
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.1e-84 318.9 270 57.8
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 7.1e-84 316.2 441 43.8
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 7.1e-84 316.2 298 55.0
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 1.2e-75 288.9 857 28.4
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 4.7e-72 276.9 1178 23.9
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 6.2e-72 276.6 786 29.0
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 4.9e-69 266.9 243 55.1
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 7.8e-67 259.6 517 34.0
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.1e-63 247.7 195 59.5
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 6.2e-56 223.4 165 64.8
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 1.4e-55 222.2 192 57.8
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 2.1e-48 198.4 194 50.0
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 7.6e-46 189.9 531 28.8
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 7.6e-46 189.9 531 28.8
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.0e-42 177.9 155 57.4
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.5e-38 164.1 97 79.4
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 8.2e-32 143.3 114 61.4
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.4e-30 137.9 89 69.7
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 2.8e-24 118.2 97 54.6
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.8e-24 118.2 75 73.3
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 4.8e-24 117.5 76 68.4
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 6.9e-23 113.6 191 35.6
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.4e-20 105.9 63 65.1
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.9e-20 105.5 68 67.6
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 6.1e-19 100.5 114 50.0
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 3.9e-18 97.8 69 65.2
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 5.1e-18 97.4 92 51.1
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 1.3e-16 92.8 113 46.9
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.7e-16 91.3 64 65.6
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.0e-15 87.0 52 71.2
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.8e-10 72.4 101 37.6
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 7.5e-09 67.0 60 50.0
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 7.0e-07 60.5 145 29.0
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 1.6e-06 59.3 118 30.5
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 2.0e-06 58.9 118 28.8
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 2.0e-06 58.9 118 28.8
Psat6g090360 Pisum sativum HOM05D005323 ORTHO05D006820 3.5e-06 58.2 118 27.1
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 5.9e-06 57.4 118 29.7
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 7.7e-06 57.0 118 27.1
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 7.7e-06 57.0 156 32.7


User provided reference genes

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