Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.2e-250 869.4 436 100.0
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 6.8e-182 641.0 429 72.0
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 6.0e-178 627.9 429 72.0
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 1.0e-177 627.1 429 70.4
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 7.3e-176 620.9 429 69.7
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.7e-175 618.2 428 70.6
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 6.2e-175 617.8 429 71.3
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 1.9e-171 606.3 429 68.8
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.6e-170 603.2 436 67.4
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.1e-169 598.2 429 67.4
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.5e-168 596.7 429 67.4
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 2.5e-168 595.9 429 67.4
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 3.3e-168 595.5 439 67.7
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 5.6e-168 594.7 433 65.1
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 7.3e-168 594.3 429 68.1
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 2.1e-167 592.8 429 66.2
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 3.6e-167 592.0 429 67.8
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 3.6e-167 592.0 439 67.2
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 6.2e-167 591.3 429 67.4
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 6.2e-167 591.3 434 65.4
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 8.1e-167 590.9 435 66.7
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.4e-166 590.1 436 66.3
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 3.1e-166 589.0 430 66.0
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 4.0e-166 588.6 429 65.7
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 5.2e-166 588.2 429 67.4
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 6.8e-166 587.8 429 67.4
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 1.2e-165 587.0 429 66.2
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.2e-165 587.0 430 66.7
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 2.0e-165 586.3 436 65.8
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 2.6e-165 585.9 431 66.1
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.6e-165 585.9 429 67.1
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 5.8e-165 584.7 429 66.9
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 2.2e-164 582.8 438 65.5
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 3.8e-164 582.0 429 65.7
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.9e-163 579.7 430 66.3
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 2.4e-163 579.3 429 66.7
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 4.2e-163 578.6 427 66.0
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 9.2e-163 577.4 431 67.7
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.2e-162 577.0 467 62.7
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 4.6e-162 575.1 434 65.7
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 6.0e-162 574.7 428 66.1
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 7.8e-162 574.3 429 65.5
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.3e-161 573.5 432 65.3
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 1.3e-161 573.5 434 65.2
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.3e-161 573.5 436 66.1
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.3e-161 573.5 433 65.1
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.7e-161 573.2 428 65.2
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.7e-161 573.2 429 65.7
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.7e-161 573.2 427 66.0
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.3e-161 572.8 430 65.3
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 3.0e-161 572.4 436 65.1
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 3.0e-161 572.4 429 65.5
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 3.9e-161 572.0 462 63.2
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 5.1e-161 571.6 447 63.5
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 6.6e-161 571.2 434 63.8
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.5e-160 570.1 429 64.6
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.5e-160 570.1 436 64.7
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.5e-160 570.1 429 65.7
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 2.5e-160 569.3 429 65.3
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 4.3e-160 568.5 427 64.9
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.6e-159 566.6 429 65.3
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 3.6e-159 565.5 433 64.0
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 4.8e-159 565.1 435 64.6
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.1e-158 563.9 437 64.1
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.1e-158 563.9 431 64.7
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.8e-158 563.1 433 63.7
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.4e-158 562.8 435 63.9
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 6.9e-158 561.2 429 64.8
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 6.9e-158 561.2 448 62.1
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 1.2e-157 560.5 435 63.4
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 5.8e-157 558.1 437 63.2
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 9.9e-157 557.4 434 64.1
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 4.9e-156 555.1 431 63.3
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 4.9e-156 555.1 425 63.8
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 4.2e-155 552.0 415 65.1
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.6e-154 550.1 434 63.1
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.7e-153 546.6 433 63.5
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 4.3e-152 542.0 471 59.0
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 4.3e-152 542.0 527 53.7
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 7.3e-152 541.2 415 63.9
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.3e-151 540.4 482 57.1
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.4e-150 537.0 481 57.4
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.2e-149 533.9 509 56.2
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 9.3e-147 524.2 383 69.2
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.3e-143 513.8 398 63.6
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.3e-143 513.8 398 64.3
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 2.6e-141 506.1 420 59.8
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 2.6e-141 506.1 435 59.5
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.6e-141 506.1 360 68.6
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.2e-138 497.3 439 58.3
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 8.7e-137 491.1 379 63.3
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 7.4e-136 488.0 374 64.4
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.4e-134 483.8 380 63.7
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.0e-134 482.3 380 63.4
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-132 477.2 418 58.6
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 9.3e-131 471.1 437 54.5
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.3e-127 460.7 431 55.5
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.3e-127 460.7 725 39.2
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 3.7e-127 459.1 451 54.1
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 5.5e-123 445.3 441 51.7
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 9.4e-123 444.5 372 61.3
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 5.3e-118 428.7 691 38.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 7.7e-117 424.9 435 50.8
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 8.8e-113 411.4 300 65.3
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.4e-112 408.3 315 64.1
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 3.1e-110 402.9 341 60.1
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 9.1e-110 401.4 438 49.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 7.7e-109 398.3 340 59.4
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 5.7e-104 382.1 284 64.8
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 3.7e-95 352.8 349 51.0
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.6e-90 337.4 253 69.6
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 4.2e-83 312.8 217 72.8
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 7.3e-75 285.4 219 61.6
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.9e-71 272.7 149 90.6
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.9e-63 246.9 161 73.9
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 6.4e-63 245.7 429 32.4
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 8.3e-63 245.4 236 58.5
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.1e-62 245.0 135 91.1
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 3.0e-60 236.9 281 49.5
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-54 218.0 213 57.3
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.2e-50 204.9 159 62.9
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.4e-48 196.8 428 33.2
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 9.9e-48 195.3 131 73.3
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 3.5e-45 186.8 142 62.7
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 6.9e-41 172.6 319 34.2
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.4e-38 162.9 85 92.9
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 5.6e-35 152.9 140 52.1
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 3.5e-29 133.7 200 41.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 6.0e-29 132.9 193 41.5
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 1.9e-22 111.3 99 48.5
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.4e-17 94.4 82 54.9
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 3.1e-17 94.0 55 72.7
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 2.6e-16 90.9 146 37.0
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 7.6e-16 89.4 82 48.8
CDE07G1760 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.9e-12 77.0 51 76.5
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 2.5e-11 74.3 71 49.3
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 1.6e-10 71.6 71 47.9
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 4.8e-10 70.1 65 53.8
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.8e-09 68.2 74 45.9
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 4.1e-09 67.0 43 72.1
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 2.2e-07 61.2 39 76.9
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 5.5e-06 56.6 50 50.0
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 7.2e-06 56.2 44 61.4


User provided reference genes

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