Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.7e-179 632.5 310 100.0
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 2.2e-102 376.3 280 64.6
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 5.0e-102 375.2 277 63.9
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 6.5e-102 374.8 265 67.5
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 6.5e-102 374.8 300 61.0
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.1e-101 374.0 303 61.1
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 2.5e-101 372.9 248 71.8
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 4.2e-101 372.1 291 62.5
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 4.2e-101 372.1 248 71.4
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 9.3e-101 370.9 244 71.7
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.2e-100 370.5 277 65.3
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.6e-100 370.2 310 60.3
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 4.6e-100 368.6 279 64.5
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 6.1e-100 368.2 266 65.0
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.0e-99 367.5 262 66.4
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.8e-99 366.7 262 65.6
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.8e-99 366.7 290 63.1
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.3e-99 366.3 280 64.6
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 2.3e-99 366.3 261 66.7
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 2.3e-99 366.3 263 66.5
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 2.3e-99 366.3 259 66.8
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 3.9e-99 365.5 259 66.8
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 5.1e-99 365.2 263 65.0
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 5.1e-99 365.2 335 56.1
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 6.7e-99 364.8 266 64.7
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 8.7e-99 364.4 275 63.6
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.9e-98 363.2 298 59.7
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.3e-98 362.5 298 59.4
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 4.3e-98 362.1 278 62.6
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 5.7e-98 361.7 308 57.5
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 5.7e-98 361.7 260 64.6
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 7.4e-98 361.3 249 68.3
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.3e-97 360.5 255 67.8
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 2.8e-97 359.4 246 65.9
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 2.8e-97 359.4 263 64.6
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 6.3e-97 358.2 277 62.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 8.2e-97 357.8 277 62.5
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.1e-96 357.5 266 64.7
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.4e-96 357.1 260 64.2
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 3.1e-96 355.9 278 62.2
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 4.1e-96 355.5 278 60.4
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 5.3e-96 355.1 255 65.9
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 5.3e-96 355.1 250 64.4
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 5.3e-96 355.1 278 59.7
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 9.1e-96 354.4 232 70.3
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 9.1e-96 354.4 232 70.3
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 9.1e-96 354.4 246 66.7
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.5e-95 353.6 312 56.7
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 2.6e-95 352.8 244 66.4
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 3.4e-95 352.4 264 63.3
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 4.5e-95 352.1 284 60.2
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 5.9e-95 351.7 248 65.3
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.7e-94 350.1 260 64.6
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.7e-94 350.1 230 70.4
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 2.2e-94 349.7 261 62.5
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 8.5e-94 347.8 268 63.4
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.1e-93 347.4 232 68.5
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.1e-93 347.4 270 61.5
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.4e-93 347.1 310 58.1
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.4e-93 347.1 277 61.4
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.5e-93 346.3 263 65.0
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 9.4e-93 344.4 244 65.6
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 9.4e-93 344.4 282 60.6
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 2.1e-92 343.2 244 65.2
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.1e-92 343.2 244 65.2
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 2.1e-92 343.2 244 65.2
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 3.6e-92 342.4 244 64.8
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 4.7e-92 342.0 277 59.6
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 7.9e-92 341.3 236 64.8
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 7.9e-92 341.3 244 63.9
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.0e-91 340.9 243 65.0
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 5.1e-91 338.6 261 63.6
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 5.1e-91 338.6 264 61.0
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 6.7e-91 338.2 294 56.8
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 2.0e-90 336.7 260 59.6
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 3.3e-90 335.9 260 61.5
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 4.4e-90 335.5 264 62.5
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 7.4e-90 334.7 260 61.5
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 7.4e-90 334.7 299 58.5
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 8.2e-89 331.3 299 58.2
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.4e-88 329.7 230 69.1
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 1.5e-87 327.0 247 61.1
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.6e-87 326.2 255 61.6
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.6e-87 326.2 255 61.6
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 2.2e-86 323.2 254 61.8
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 2.1e-84 316.6 250 62.0
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.3e-81 307.4 206 69.9
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 8.2e-81 304.7 267 58.8
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 3.1e-80 302.8 240 60.0
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 2.7e-76 289.7 238 58.4
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 6.1e-76 288.5 267 53.9
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.3e-75 286.6 276 52.9
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.4e-72 276.6 277 52.0
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 9.1e-72 274.6 218 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.3e-67 260.0 210 58.6
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 2.0e-66 256.9 266 48.9
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 2.2e-65 253.4 203 58.1
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 3.1e-64 249.6 164 73.2
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 1.6e-63 247.3 275 49.1
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 5.9e-63 245.4 193 60.6
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.9e-61 240.4 151 70.2
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 3.5e-55 219.5 173 59.5
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.0e-51 208.0 262 42.4
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 2.2e-49 200.3 176 55.1
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 6.4e-49 198.7 244 43.0
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 8.3e-41 171.8 156 54.5
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 5.2e-35 152.5 209 40.2
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.8e-28 130.2 122 54.9
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.8e-28 130.2 113 56.6
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 4.0e-27 126.3 94 66.0
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.6e-26 123.6 99 61.6
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 3.4e-26 123.2 131 45.8
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 3.4e-26 123.2 178 39.9
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 4.9e-25 119.4 150 44.0
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 5.4e-24 115.9 124 46.8
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.2e-24 115.2 98 59.2
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 2.4e-19 100.5 135 41.5
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 2.6e-18 97.1 119 42.9
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 9.9e-18 95.1 140 38.6
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.3e-17 94.7 119 42.0
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.9e-17 93.6 57 73.7
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.0e-14 85.1 65 56.9
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 5.6e-13 79.3 204 29.4
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 9.0e-11 72.0 118 35.6
SGA_v2.0_scaffold18G08269 Striga asiatica HOM05D001287 ORTHO05D001226 9.0e-11 72.0 203 29.1
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 9.9e-10 68.6 116 37.1
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 6.4e-09 65.9 56 48.2
unitig_52.g17658 Utricularia gibba HOM05D001287 ORTHO05D001226 6.4e-09 65.9 210 27.6
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-08 64.7 120 32.5
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.4e-08 64.7 41 65.9
COL.COLO4_29186 Corchorus olitorius HOM05D001287 ORTHO05D001941 2.4e-08 63.9 201 27.9
MCO05G737 Micromonas commoda HOM05D001287 ORTHO05D001226 2.4e-08 63.9 209 25.8
AT3G27440 Arabidopsis thaliana HOM05D001287 ORTHO05D001226 4.2e-08 63.2 205 25.9
Carub.0005s0585 Capsella rubella HOM05D001287 ORTHO05D001226 5.4e-08 62.8 204 26.5
AL5G16850 Arabidopsis lyrata HOM05D001287 ORTHO05D001226 7.1e-08 62.4 204 26.0
Sp2g16640 Schrenkiella parvula HOM05D001287 ORTHO05D001226 7.1e-08 62.4 204 25.5
Gohir.A07G227400 Gossypium hirsutum HOM05D001287 ORTHO05D001226 9.3e-08 62.0 203 26.1
CARHR148810 Cardamine hirsuta HOM05D001287 ORTHO05D001226 1.2e-07 61.6 204 26.5
Thhalv10005624m.g Eutrema salsugineum HOM05D001287 ORTHO05D001226 1.2e-07 61.6 205 25.9
FvH4_6g51940 Fragaria vesca HOM05D001287 ORTHO05D001226 1.2e-07 61.6 203 24.6
FAN14G5772 Fragaria x ananassa HOM05D001287 ORTHO05D001226 1.2e-07 61.6 203 24.6
Pp3c9_5950 Physcomitrium patens HOM05D001287 ORTHO05D001226 1.2e-07 61.6 235 23.8
FAN05G2454 Fragaria x ananassa HOM05D001287 ORTHO05D001226 1.6e-07 61.2 203 24.6
Gohir.D07G234500 Gossypium hirsutum HOM05D001287 ORTHO05D001226 2.7e-07 60.5 203 25.6
Gorai.001G270100 Gossypium raimondii HOM05D001287 ORTHO05D001226 2.7e-07 60.5 203 25.6
CANSAT64G2102 Cannabis sativa HOM05D001287 ORTHO05D001226 3.5e-07 60.1 211 26.1
Oeu011961.1 Olea europaea HOM05D001287 ORTHO05D001226 4.6e-07 59.7 205 24.4
THA.LOC104817718 Tarenaya hassleriana HOM05D001287 ORTHO05D001226 4.6e-07 59.7 227 27.3
AL7G26410 Arabidopsis lyrata HOM05D001287 ORTHO05D001226 6.0e-07 59.3 207 27.1
BcaNung02407 Brassica carinata HOM05D001287 ORTHO05D001226 6.0e-07 59.3 217 26.7
Cre16.g681850 Chlamydomonas reinhardtii HOM05D001287 ORTHO05D001226 6.0e-07 59.3 166 26.5
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.0e-06 58.5 93 38.7
AT4G26510 Arabidopsis thaliana HOM05D001287 ORTHO05D001226 1.3e-06 58.2 207 26.6
C01p22500 Brassica napus HOM05D001287 ORTHO05D000590 1.3e-06 58.2 219 26.9
BolC1t02181H Brassica oleracea HOM05D001287 ORTHO05D000590 1.3e-06 58.2 219 26.9
CARHR234100 Cardamine hirsuta HOM05D001287 ORTHO05D001226 1.3e-06 58.2 207 27.1
Pp3c18_8810 Physcomitrium patens HOM05D001287 ORTHO05D001226 1.3e-06 58.2 221 26.2
A01p17780 Brassica napus HOM05D001287 ORTHO05D001226 2.3e-06 57.4 219 26.9
BraA01t01733Z Brassica rapa HOM05D001287 ORTHO05D001226 2.3e-06 57.4 219 26.9
BcaC09g50718 Brassica carinata HOM05D001287 ORTHO05D001226 3.0e-06 57.0 219 26.9
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 3.0e-06 57.0 108 33.3
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 3.0e-06 57.0 159 30.2
Carub.0007s1437 Capsella rubella HOM05D001287 ORTHO05D001226 3.9e-06 56.6 207 26.1


User provided reference genes

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