Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0013 Ceratophyllum demersum HOM05D003710 ORTHO05D129107 3.0e-60 235.0 118 100.0
CDE05G3638 Ceratophyllum demersum HOM05D003710 ORTHO05D005250 1.6e-29 132.9 75 90.7
PSO210G5044 Papaver somniferum HOM05D003710 ORTHO05D005250 1.6e-13 79.7 72 50.0
Medtr4g091320 Medicago truncatula HOM05D003710 ORTHO05D005250 2.8e-13 79.0 71 50.7
TPR.G15384 Trifolium pratense HOM05D003710 ORTHO05D005250 4.8e-13 78.2 71 50.7
MBI02_g47448_MAGBIO Magnolia biondii HOM05D003710 ORTHO05D005250 6.2e-13 77.8 71 52.1
TAR627G0563 Trochodendron aralioides HOM05D003710 ORTHO05D005250 1.4e-12 76.6 71 54.9
PSO832G4111 Papaver somniferum HOM05D003710 ORTHO05D005250 1.8e-12 76.3 72 45.8
Phvul.002G221300 Phaseolus vulgaris HOM05D003710 ORTHO05D005250 2.4e-12 75.9 71 49.3
Glyma.07G189700 Glycine max HOM05D003710 ORTHO05D005250 3.1e-12 75.5 71 49.3
Lj4g0027727 Lotus japonicus HOM05D003710 ORTHO05D005250 3.1e-12 75.5 71 49.3
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 4.0e-12 75.1 71 47.9
Thecc.06G200200 Theobroma cacao HOM05D003710 ORTHO05D005250 4.0e-12 75.1 71 49.3
TAR626G0587 Trochodendron aralioides HOM05D003710 ORTHO05D005250 4.0e-12 75.1 71 52.1
VMungo0251G0300 Vigna mungo HOM05D003710 ORTHO05D005250 4.0e-12 75.1 71 49.3
Glyma.08G059600 Glycine max HOM05D003710 ORTHO05D005250 1.2e-11 73.6 71 49.3
Glyma.13G246700 Glycine max HOM05D003710 ORTHO05D005250 2.0e-11 72.8 71 49.3
Phvul.006G192500 Phaseolus vulgaris HOM05D003710 ORTHO05D005250 2.6e-11 72.4 71 49.3
Sed0006031 Sechium edule HOM05D003710 ORTHO05D005250 2.6e-11 72.4 71 50.7
VMungo0540G1761 Vigna mungo HOM05D003710 ORTHO05D005250 3.4e-11 72.0 71 47.9
arahy.Tifrunner.gnm1.ann1.FW8YYF Arachis hypogaea HOM05D003710 ORTHO05D005250 4.5e-11 71.6 70 48.6
Lj6g0025319 Lotus japonicus HOM05D003710 ORTHO05D005250 4.5e-11 71.6 70 48.6
Nn1g06778 Nelumbo nucifera HOM05D003710 ORTHO05D005250 4.5e-11 71.6 71 52.1
RcHm_v2.0_Chr5g0006221 Rosa chinensis HOM05D003710 ORTHO05D005250 4.5e-11 71.6 65 52.3
Actinidia26991 Actinidia chinensis HOM05D003710 ORTHO05D005250 5.8e-11 71.2 71 50.7
TWI38G2371 Tripterygium wilfordii HOM05D003710 ORTHO05D005250 5.8e-11 71.2 72 47.2
Gohir.A10G021400 Gossypium hirsutum HOM05D003710 ORTHO05D005250 7.6e-11 70.9 71 50.7
Gorai.011G023300 Gossypium raimondii HOM05D003710 ORTHO05D005250 7.6e-11 70.9 71 50.7
Ah.09g236190 Amaranthus hybridus HOM05D003710 ORTHO05D005250 9.9e-11 70.5 73 49.3
arahy.Tifrunner.gnm1.ann1.LGD9DB Arachis hypogaea HOM05D003710 ORTHO05D005250 9.9e-11 70.5 70 47.1
MD05G1326000 Malus domestica HOM05D003710 ORTHO05D005250 1.3e-10 70.1 71 46.5
MELO3C002554.2 Cucumis melo HOM05D003710 ORTHO05D005250 1.7e-10 69.7 71 45.1
Glyma.15G067200 Glycine max HOM05D003710 ORTHO05D005250 1.7e-10 69.7 71 47.9
FvH4_3g03930 Fragaria vesca HOM05D003710 ORTHO05D005250 2.9e-10 68.9 65 50.8
FAN11G0401 Fragaria x ananassa HOM05D003710 ORTHO05D005250 2.9e-10 68.9 65 50.8
FAN21G1071 Fragaria x ananassa HOM05D003710 ORTHO05D005250 2.9e-10 68.9 65 50.8
FAN25G1364 Fragaria x ananassa HOM05D003710 ORTHO05D005250 2.9e-10 68.9 65 50.8
Potri.004G033800 Populus trichocarpa HOM05D003710 ORTHO05D005250 2.9e-10 68.9 72 47.2
Gohir.D10G022200 Gossypium hirsutum HOM05D003710 ORTHO05D005250 3.8e-10 68.6 71 49.3
Nitab4.5_0000190g0040 Nicotiana tabacum HOM05D003710 ORTHO05D005250 3.8e-10 68.6 71 45.1
SalBow7G1351 Salvia bowleyana HOM05D003710 ORTHO05D005250 3.8e-10 68.6 71 45.1
SalBow7G2176 Salvia bowleyana HOM05D003710 ORTHO05D005250 3.8e-10 68.6 71 45.1
Oeu038209.1 Olea europaea HOM05D003710 ORTHO05D005250 4.9e-10 68.2 71 46.5
ATR0693G260 Amborella trichopoda HOM05D003710 ORTHO05D005250 6.4e-10 67.8 79 40.5
FAN16G2996 Fragaria x ananassa HOM05D003710 ORTHO05D005250 1.1e-09 67.0 65 49.2
Manes.17G033200 Manihot esculenta HOM05D003710 ORTHO05D005250 1.9e-09 66.2 70 45.7
Oeu038211.1 Olea europaea HOM05D003710 ORTHO05D005250 1.9e-09 66.2 71 45.1
AT1G61350 Arabidopsis thaliana HOM05D003710 ORTHO05D005250 3.2e-09 65.5 68 45.6
A09p16800 Brassica napus HOM05D003710 ORTHO05D005250 4.2e-09 65.1 73 41.1
BraA09t37317Z Brassica rapa HOM05D003710 ORTHO05D005250 4.2e-09 65.1 73 41.1
Carub.0002s0382 Capsella rubella HOM05D003710 ORTHO05D005250 5.5e-09 64.7 68 45.6
CARHR051290 Cardamine hirsuta HOM05D003710 ORTHO05D005250 7.1e-09 64.3 68 44.1
CDE02G4372 Ceratophyllum demersum HOM05D003710 ORTHO05D005250 7.1e-09 64.3 70 48.6
AL2G14980 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 9.3e-09 63.9 68 44.1
BcaC04g22323 Brassica carinata HOM05D003710 ORTHO05D005250 9.3e-09 63.9 68 44.1
BolC9t54966H Brassica oleracea HOM05D003710 ORTHO05D005250 9.3e-09 63.9 68 44.1
Eucgr.E03808 Eucalyptus grandis HOM05D003710 ORTHO05D005250 9.3e-09 63.9 70 42.9
Thhalv10023383m.g Eutrema salsugineum HOM05D003710 ORTHO05D005250 9.3e-09 63.9 68 44.1
BcaB07g31272 Brassica carinata HOM05D003710 ORTHO05D005250 1.2e-08 63.5 65 46.2
Lsat_1_v5_gn_4_56781 Lactuca sativa HOM05D003710 ORTHO05D005250 1.2e-08 63.5 71 42.3
AL1G22280 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 1.6e-08 63.2 66 45.5
ECA248G2720 Erigeron canadensis HOM05D003710 ORTHO05D005250 1.6e-08 63.2 71 42.3
Lsat_1_v5_gn_1_122121 Lactuca sativa HOM05D003710 ORTHO05D005250 1.6e-08 63.2 71 43.7
C09p20690 Brassica napus HOM05D003710 ORTHO05D005250 2.1e-08 62.8 68 42.6
Sp2g03150 Schrenkiella parvula HOM05D003710 ORTHO05D005250 2.1e-08 62.8 68 42.6
unitig_26.g9375 Utricularia gibba HOM05D003710 ORTHO05D005250 2.7e-08 62.4 71 42.3
HanXRQChr16g0517601 Helianthus annuus HOM05D003710 ORTHO05D005250 3.5e-08 62.0 66 40.9
Sed0008753 Sechium edule HOM05D003710 ORTHO05D005250 3.5e-08 62.0 71 42.3
SGA_v2.0_scaffold159G37691 Striga asiatica HOM05D003710 ORTHO05D005250 3.5e-08 62.0 69 49.3
Zm00001eb106840 Zea mays HOM05D003710 ORTHO05D005250 3.5e-08 62.0 73 45.2
HanXRQChr10g0282191 Helianthus annuus HOM05D003710 ORTHO05D005250 6.0e-08 61.2 71 38.0
Eucgr.E03694 Eucalyptus grandis HOM05D003710 ORTHO05D005250 7.9e-08 60.8 70 41.4
Aa31LG2G9320 Aethionema arabicum HOM05D003710 ORTHO05D005250 1.0e-07 60.5 71 42.3
Os07g0560300 Oryza sativa ssp. japonica HOM05D003710 ORTHO05D005250 1.0e-07 60.5 92 42.4
HPP92_016552 Vanilla planifolia HOM05D003710 ORTHO05D005250 1.0e-07 60.5 68 45.6
HanXRQChr01g0004811 Helianthus annuus HOM05D003710 ORTHO05D005250 1.3e-07 60.1 67 43.3
ECA234G2608 Erigeron canadensis HOM05D003710 ORTHO05D005250 3.9e-07 58.5 68 41.2
CAN.G424.19 Capsicum annuum HOM05D003710 ORTHO05D005250 5.1e-07 58.2 71 39.4
THA.LOC104809545 Tarenaya hassleriana HOM05D003710 ORTHO05D005250 5.1e-07 58.2 77 40.3
Cfa016086 Carpinus fangiana HOM05D003710 ORTHO05D005250 6.7e-07 57.8 60 46.7
Carub.0001s1087 Capsella rubella HOM05D003710 ORTHO05D005250 8.7e-07 57.4 74 41.9
Aqoxy1G03894 Aquilegia oxysepala HOM05D003710 ORTHO05D005250 1.1e-06 57.0 70 38.6
Zm00001eb324200 Zea mays HOM05D003710 ORTHO05D005250 2.5e-06 55.8 76 43.4
unitig_749.g13637 Utricularia gibba HOM05D003710 ORTHO05D005250 3.3e-06 55.5 93 32.3
THA.LOC104819023 Tarenaya hassleriana HOM05D003710 ORTHO05D005250 4.3e-06 55.1 82 41.5
HPP92_014081 Vanilla planifolia HOM05D003710 ORTHO05D005250 4.3e-06 55.1 65 41.5
Dinv18991 Davidia involucrata HOM05D003710 ORTHO05D005250 7.4e-06 54.3 105 33.3
Dinv40474 Davidia involucrata HOM05D003710 ORTHO05D005250 7.4e-06 54.3 105 34.3
Psat7g108400 Pisum sativum HOM05D003710 ORTHO05D005250 7.4e-06 54.3 49 46.9
Rhsim02G0119400 Rhododendron simsii HOM05D003710 ORTHO05D005250 7.4e-06 54.3 99 35.4
AUR62012482 Chenopodium quinoa HOM05D003710 ORTHO05D005250 9.6e-06 53.9 48 50.0


User provided reference genes

Program Settings