Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.2e-164 583.2 302 100.0
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.9e-114 416.4 302 76.8
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 4.5e-31 139.4 321 33.3
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 7.1e-29 132.1 261 36.4
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.2e-28 131.3 354 32.2
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 7.9e-28 128.6 318 30.2
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.5e-26 123.6 338 30.8
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.5e-26 123.6 344 31.1
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 3.3e-26 123.2 341 32.0
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.3e-26 122.9 347 31.7
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 5.6e-26 122.5 249 36.9
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.6e-26 122.5 330 32.1
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 5.6e-26 122.5 328 30.5
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 7.4e-26 122.1 326 30.1
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.3e-25 121.3 333 32.4
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.6e-25 120.9 325 32.3
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.1e-25 120.6 347 31.7
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 4.8e-25 119.4 343 31.2
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 6.2e-25 119.0 333 33.3
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.1e-24 118.2 337 31.8
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 3.1e-24 116.7 312 33.0
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 4.0e-24 116.3 314 32.2
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 4.0e-24 116.3 329 30.4
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 6.9e-24 115.5 294 33.3
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 9.0e-24 115.2 308 32.5
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 9.0e-24 115.2 245 35.1
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 9.0e-24 115.2 327 30.6
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.0e-23 114.0 312 31.7
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 4.5e-23 112.8 315 28.9
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 4.5e-23 112.8 336 31.2
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 5.8e-23 112.5 319 29.5
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 5.8e-23 112.5 327 31.5
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.7e-22 110.9 327 31.5
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 2.2e-22 110.5 339 27.4
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 4.9e-22 109.4 234 36.8
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 8.4e-22 108.6 251 33.5
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 8.4e-22 108.6 307 31.9
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 1.1e-21 108.2 249 34.5
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-21 108.2 327 31.5
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 1.4e-21 107.8 291 33.3
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.9e-21 107.5 320 27.8
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 2.5e-21 107.1 319 31.3
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 3.2e-21 106.7 333 28.2
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.2e-21 106.7 320 30.6
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.2e-21 106.7 320 30.6
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 3.2e-21 106.7 320 31.6
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.2e-21 106.3 327 31.2
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 7.1e-21 105.5 248 32.3
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 9.3e-21 105.1 286 30.1
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.6e-20 104.4 321 29.3
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.1e-20 104.0 309 29.8
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 3.5e-20 103.2 330 30.3
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 7.9e-20 102.1 331 28.1
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.0e-19 101.7 322 29.5
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.3e-19 101.3 273 30.0
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.8e-19 100.9 316 30.7
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 1.8e-19 100.9 326 27.6
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.8e-19 100.9 327 27.2
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 2.3e-19 100.5 244 32.8
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 3.0e-19 100.1 339 28.3
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 3.9e-19 99.8 325 29.8
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 5.1e-19 99.4 256 32.4
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 6.7e-19 99.0 287 29.6
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 6.7e-19 99.0 318 30.2
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 6.7e-19 99.0 331 29.0
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 6.7e-19 99.0 340 27.6
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 8.7e-19 98.6 220 35.9
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.1e-18 98.2 311 30.2
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 1.1e-18 98.2 237 32.9
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 1.1e-18 98.2 320 27.5
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.1e-18 98.2 316 27.8
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.5e-18 97.8 250 31.6
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 1.5e-18 97.8 318 30.8
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 1.9e-18 97.4 311 30.2
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.9e-18 97.4 254 30.7
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 1.9e-18 97.4 338 27.8
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 1.9e-18 97.4 251 30.3
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 2.5e-18 97.1 254 31.1
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.5e-18 97.1 247 30.8
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.3e-18 96.7 247 30.4
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 3.3e-18 96.7 323 28.5
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 4.3e-18 96.3 255 29.0
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 5.7e-18 95.9 339 27.7
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 9.6e-18 95.1 331 31.4
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.6e-17 94.4 334 29.0
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.6e-17 94.4 323 29.4
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.1e-17 94.0 325 28.0
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 2.1e-17 94.0 316 28.2
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 2.8e-17 93.6 309 29.1
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 2.8e-17 93.6 319 27.0
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 3.7e-17 93.2 242 30.6
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 6.3e-17 92.4 211 31.3
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 6.3e-17 92.4 339 30.4
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 6.3e-17 92.4 139 41.7
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 1.1e-16 91.7 339 27.1
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.1e-16 91.7 347 28.8
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.4e-16 91.3 317 27.8
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.8e-16 90.9 331 29.0
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 2.4e-16 90.5 324 27.8
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 3.1e-16 90.1 336 28.3
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 4.1e-16 89.7 300 31.7
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 5.3e-16 89.4 214 32.2
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 5.3e-16 89.4 326 29.1
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 5.3e-16 89.4 301 29.6
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 5.3e-16 89.4 307 29.6
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 6.9e-16 89.0 269 28.6
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 9.0e-16 88.6 230 28.7
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 1.2e-15 88.2 249 30.5
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 1.2e-15 88.2 214 32.2
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.5e-15 87.8 326 31.0
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 1.5e-15 87.8 256 31.2
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 1.5e-15 87.8 223 30.5
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 2.0e-15 87.4 338 26.9
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 2.0e-15 87.4 249 28.9
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 2.0e-15 87.4 317 29.0
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 3.4e-15 86.7 258 31.0
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 3.4e-15 86.7 323 29.1
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 3.4e-15 86.7 323 29.1
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 7.6e-15 85.5 321 28.7
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.0e-14 85.1 308 26.6
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 1.3e-14 84.7 343 27.1
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.7e-14 84.3 307 25.7
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 2.2e-14 84.0 346 27.7
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.2e-14 84.0 188 34.6
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 1.1e-13 81.6 256 30.5
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.1e-13 81.6 313 27.5
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.4e-13 81.3 200 32.5
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 1.9e-13 80.9 258 29.5
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 1.9e-13 80.9 328 28.4
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 7.2e-13 79.0 213 30.5
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 1.6e-12 77.8 219 29.2
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.6e-12 77.8 256 30.1
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.6e-12 77.8 236 29.2
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 1.6e-12 77.8 254 30.7
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 3.5e-12 76.6 254 27.6
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 3.5e-12 76.6 268 27.2
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 4.6e-12 76.3 328 26.5
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.1e-12 75.9 142 38.7
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.0e-11 75.1 188 33.0
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.3e-11 74.7 310 26.1
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.8e-11 74.3 245 26.1
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 1.8e-11 74.3 228 30.7
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 5.1e-11 72.8 269 27.1
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.7e-11 72.4 142 37.3
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 8.7e-11 72.0 109 38.5
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.1e-10 71.6 124 37.9
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 1.1e-10 71.6 192 31.8
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 3.3e-10 70.1 247 30.4
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 9.7e-10 68.6 279 27.2
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 1.3e-09 68.2 222 29.7
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.3e-09 68.2 255 29.4
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 8.2e-09 65.5 165 34.5
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 1.1e-08 65.1 217 29.5
HanXRQChr14g0461291 Helianthus annuus HOM05D002766 ORTHO05D002809 1.4e-08 64.7 286 27.3
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 1.8e-08 64.3 105 41.9
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 3.1e-08 63.5 255 26.7
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 4.1e-08 63.2 153 34.0
Lj1A977T69 Lonicera japonica HOM05D002766 ORTHO05D002809 6.9e-08 62.4 162 34.0
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.2e-07 61.6 127 37.0
PGSC0003DMG400018857 Solanum tuberosum HOM05D002766 ORTHO05D002809 5.9e-07 59.3 229 26.6
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 1.0e-06 58.5 327 25.1
SEGI_27148 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.0e-06 58.5 231 25.1
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.3e-06 58.2 285 26.0
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 1.3e-06 58.2 277 24.9
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.7e-06 57.8 212 29.7
Zm00001eb186540 Zea mays HOM05D002766 ORTHO05D002809 1.7e-06 57.8 118 36.4
Peaxi162Scf00271g00833 Petunia axillaris HOM05D002766 ORTHO05D002809 3.8e-06 56.6 251 24.7
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 3.8e-06 56.6 253 26.1
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 6.5e-06 55.8 257 27.6
ECA233G0134 Erigeron canadensis HOM05D002766 ORTHO05D002809 8.5e-06 55.5 164 31.1
ECA238G1863 Erigeron canadensis HOM05D002766 ORTHO05D002809 8.5e-06 55.5 255 26.7
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 8.5e-06 55.5 363 24.8
Potri.003G107400 Populus trichocarpa HOM05D002766 ORTHO05D002809 8.5e-06 55.5 249 26.9


User provided reference genes

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