Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.9e-101 372.5 187 100.0
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 8.7e-94 347.1 186 90.9
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 1.2e-55 220.3 183 55.2
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 8.0e-55 217.6 183 60.1
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.0e-54 217.2 181 58.6
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.0e-54 217.2 179 60.9
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.4e-53 212.2 180 57.2
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.4e-53 211.8 183 57.4
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 5.7e-53 211.5 180 56.7
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.3e-52 210.3 180 57.2
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.3e-52 210.3 184 57.1
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.7e-52 209.9 183 55.7
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.7e-52 209.9 183 56.8
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.7e-52 209.9 183 55.2
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 2.8e-52 209.1 183 54.6
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.7e-52 208.8 184 53.8
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 4.8e-52 208.4 183 53.6
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 4.8e-52 208.4 183 56.3
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.8e-51 206.5 183 52.5
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.8e-51 206.5 180 55.0
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.4e-51 206.1 183 56.3
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.1e-51 205.7 183 56.3
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 3.1e-51 205.7 183 54.1
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 5.4e-51 204.9 183 54.1
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 5.4e-51 204.9 183 55.7
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 5.4e-51 204.9 183 55.2
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 5.4e-51 204.9 183 55.2
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 5.4e-51 204.9 183 55.2
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 9.1e-51 204.1 183 53.6
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.2e-50 203.8 184 51.6
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-50 203.8 183 55.7
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.2e-50 203.8 183 55.7
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.6e-50 203.4 184 55.4
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 2.0e-50 203.0 183 53.6
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.7e-50 202.6 183 53.0
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 2.7e-50 202.6 184 55.4
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.7e-50 202.6 183 52.5
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 3.5e-50 202.2 183 50.3
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 3.5e-50 202.2 183 53.6
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 5.9e-50 201.4 184 52.7
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 5.9e-50 201.4 180 55.0
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 7.7e-50 201.1 184 52.7
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 7.7e-50 201.1 184 53.3
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.7e-49 199.9 179 55.3
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.7e-49 199.9 177 54.8
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.9e-49 199.1 180 55.0
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 2.9e-49 199.1 179 55.3
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.9e-49 199.1 186 52.2
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 5.0e-49 198.4 183 51.9
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 6.5e-49 198.0 184 53.8
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 8.5e-49 197.6 183 54.6
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.1e-48 197.2 183 52.5
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.1e-48 197.2 183 52.5
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.1e-48 197.2 183 52.5
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.1e-48 197.2 180 53.3
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.9e-48 196.4 180 53.3
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 3.2e-48 195.7 183 51.9
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.2e-48 195.7 184 54.3
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 3.2e-48 195.7 184 50.5
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 4.2e-48 195.3 184 52.7
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 4.2e-48 195.3 183 51.9
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 4.2e-48 195.3 183 51.9
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 7.2e-48 194.5 177 52.5
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 9.4e-48 194.1 179 52.5
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.2e-47 193.7 178 52.8
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.2e-47 193.7 179 54.2
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.6e-47 193.4 180 54.4
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.6e-47 193.4 180 54.4
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 2.1e-47 193.0 183 51.4
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 2.7e-47 192.6 183 49.7
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 2.7e-47 192.6 180 53.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 3.6e-47 192.2 183 50.3
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 3.6e-47 192.2 184 52.7
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 4.7e-47 191.8 180 52.8
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 4.7e-47 191.8 179 53.6
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 6.1e-47 191.4 180 53.9
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 8.0e-47 191.0 183 51.9
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 8.0e-47 191.0 178 52.2
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.0e-46 190.7 183 49.7
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.4e-46 190.3 183 51.9
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.4e-46 190.3 179 53.1
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.8e-46 189.9 183 52.5
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 5.2e-46 188.3 184 53.8
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 5.2e-46 188.3 182 52.7
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 5.2e-46 188.3 183 49.2
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 6.8e-46 188.0 180 52.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 8.8e-46 187.6 183 50.3
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 8.8e-46 187.6 183 48.6
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 8.8e-46 187.6 180 51.1
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 2.6e-45 186.0 183 49.7
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 3.4e-45 185.7 183 51.4
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 5.7e-45 184.9 183 48.6
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.5e-45 184.5 179 50.8
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.3e-44 183.7 180 49.4
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.3e-44 183.7 205 46.3
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 1.7e-44 183.3 181 53.0
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.7e-44 183.3 200 47.0
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 2.2e-44 183.0 182 53.3
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 3.7e-44 182.2 180 48.9
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.3e-44 181.0 180 51.1
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.8e-43 179.9 180 50.6
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.8e-43 179.9 153 58.2
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 3.1e-43 179.1 180 50.0
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.3e-41 172.9 212 43.9
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 3.8e-41 172.2 200 45.0
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 3.3e-40 169.1 146 58.9
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 1.2e-39 167.2 203 44.3
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.1e-39 166.4 180 48.9
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.1e-39 166.4 180 48.9
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.8e-39 166.0 180 48.9
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.8e-39 166.0 180 48.9
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.4e-38 163.7 180 47.8
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.0e-37 159.8 198 45.5
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.0e-37 159.8 184 47.8
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.3e-36 157.1 143 55.2
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 2.9e-36 156.0 149 53.7
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.4e-35 153.7 123 60.2
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 5.4e-35 151.8 185 43.8
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 5.4e-35 151.8 147 52.4
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 9.2e-35 151.0 185 43.8
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.2e-34 150.6 188 43.6
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 2.0e-34 149.8 164 44.5
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 3.5e-34 149.1 154 50.6
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.9e-34 148.3 140 53.6
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 1.0e-33 147.5 207 42.5
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 6.6e-33 144.8 232 40.1
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 7.3e-32 141.4 178 42.1
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.1e-30 136.0 153 47.7
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.3e-28 130.6 179 38.0
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 3.2e-27 125.9 186 36.0
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.2e-26 124.0 180 39.4
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.0e-26 123.2 188 37.2
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.7e-26 122.9 189 38.1
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 6.0e-26 121.7 127 48.0
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.9e-16 90.1 117 41.0
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.8e-14 83.6 95 42.1
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 5.2e-14 82.0 144 34.7
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.5e-13 80.5 88 45.5
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.5e-13 80.5 77 55.8
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 2.7e-10 69.7 63 49.2
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 1.3e-09 67.4 138 30.4
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.5e-08 63.2 178 27.0


User provided reference genes

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