Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.4e-40 168.3 81 100.0
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 9.5e-37 156.4 79 92.4
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 1.0e-27 126.3 75 78.7
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 5.2e-27 124.0 77 71.4
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 2.0e-26 122.1 76 73.7
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 7.5e-26 120.2 74 75.7
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 7.5e-26 120.2 74 75.7
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 1.3e-25 119.4 75 72.0
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 2.9e-25 118.2 74 74.3
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 3.7e-25 117.9 75 70.7
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 3.7e-25 117.9 75 73.3
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 4.9e-25 117.5 75 70.7
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 8.3e-25 116.7 75 72.0
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 1.4e-24 115.9 76 72.4
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 1.4e-24 115.9 68 76.5
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 2.4e-24 115.2 75 72.0
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 4.1e-24 114.4 75 70.7
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 7.0e-24 113.6 77 67.5
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 9.2e-24 113.2 75 69.3
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 9.2e-24 113.2 76 69.7
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 1.6e-23 112.5 72 72.2
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 2.7e-23 111.7 75 68.0
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 2.7e-23 111.7 75 68.0
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 2.7e-23 111.7 74 70.3
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 3.5e-23 111.3 75 66.7
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 3.5e-23 111.3 76 68.4
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 4.6e-23 110.9 73 69.9
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 5.9e-23 110.5 76 68.4
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 7.8e-23 110.2 75 68.0
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 7.8e-23 110.2 75 69.3
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 1.0e-22 109.8 75 69.3
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 1.3e-22 109.4 75 69.3
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 1.3e-22 109.4 78 64.1
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.3e-22 109.4 75 68.0
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 1.7e-22 109.0 76 68.4
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 1.7e-22 109.0 76 68.4
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 1.7e-22 109.0 81 64.2
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 1.7e-22 109.0 68 76.5
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 2.3e-22 108.6 73 63.0
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 2.3e-22 108.6 81 63.0
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 2.3e-22 108.6 73 68.5
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 3.9e-22 107.8 81 64.2
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 3.9e-22 107.8 78 61.5
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 5.0e-22 107.5 72 69.4
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 5.0e-22 107.5 73 71.2
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 5.0e-22 107.5 75 66.7
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 5.0e-22 107.5 76 65.8
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 6.6e-22 107.1 75 66.7
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 6.6e-22 107.1 73 69.9
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 6.6e-22 107.1 77 67.5
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 1.1e-21 106.3 75 66.7
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 1.1e-21 106.3 79 64.6
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 1.5e-21 105.9 74 67.6
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 2.5e-21 105.1 80 60.0
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 3.3e-21 104.8 76 64.5
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 3.3e-21 104.8 75 66.7
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 3.3e-21 104.8 74 66.2
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 4.3e-21 104.4 59 78.0
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 5.6e-21 104.0 73 63.0
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 5.6e-21 104.0 73 68.5
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 7.3e-21 103.6 73 63.0
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 9.5e-21 103.2 73 61.6
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 9.5e-21 103.2 74 63.5
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 9.5e-21 103.2 74 63.5
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 1.2e-20 102.8 65 72.3
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 1.2e-20 102.8 73 65.8
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 1.6e-20 102.4 73 64.4
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 2.1e-20 102.1 76 61.8
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.1e-20 102.1 58 79.3
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 2.1e-20 102.1 74 63.5
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 2.8e-20 101.7 73 64.4
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 2.8e-20 101.7 74 63.5
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 2.8e-20 101.7 74 63.5
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 2.8e-20 101.7 78 62.8
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 2.8e-20 101.7 65 70.8
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 2.8e-20 101.7 73 64.4
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 3.6e-20 101.3 74 62.2
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 3.6e-20 101.3 74 62.2
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 3.6e-20 101.3 74 62.2
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 3.6e-20 101.3 73 67.1
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.6e-20 101.3 80 58.8
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 4.7e-20 100.9 72 66.7
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 6.2e-20 100.5 74 62.2
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 8.0e-20 100.1 72 62.5
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 1.1e-19 99.8 73 63.0
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 1.1e-19 99.8 70 65.7
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 1.8e-19 99.0 73 61.6
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 2.3e-19 98.6 80 57.5
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 2.3e-19 98.6 76 59.2
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 3.1e-19 98.2 67 65.7
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 8.9e-19 96.7 69 63.8
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 2.0e-18 95.5 68 67.6
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 3.4e-18 94.7 76 56.6
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 7.5e-18 93.6 59 74.6
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 1.1e-16 89.7 71 59.2
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 3.2e-16 88.2 58 70.7
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 3.2e-16 88.2 79 53.2
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 9.2e-16 86.7 72 55.6
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.8e-11 72.4 67 55.2
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 4.0e-11 71.2 71 56.3
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 6.8e-11 70.5 67 53.7
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 8.9e-11 70.1 60 60.0
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 2.0e-10 68.9 77 49.4
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 2.6e-10 68.6 51 64.7
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 4.4e-10 67.8 55 63.6


User provided reference genes

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