Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 4.1e-195 684.5 333 100.0
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.6e-186 656.0 333 95.2
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.6e-138 496.5 341 71.8
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.4e-134 483.4 337 71.2
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 1.5e-133 479.9 347 68.9
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 3.2e-131 472.2 346 67.3
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 2.3e-129 466.1 351 65.5
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.0e-129 465.7 341 67.4
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 8.7e-129 464.2 347 66.0
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.5e-128 463.4 346 66.8
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 1.5e-128 463.4 338 68.0
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.9e-128 463.0 343 66.8
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 9.6e-128 460.7 351 65.2
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 9.6e-128 460.7 351 65.2
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.3e-127 460.3 347 66.9
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.3e-127 460.3 341 65.7
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 1.6e-127 459.9 345 66.7
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 6.2e-127 458.0 352 63.9
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.1e-126 457.2 347 65.1
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.1e-126 457.2 352 63.9
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 2.4e-126 456.1 345 66.1
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 5.3e-126 454.9 343 65.6
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 9.0e-126 454.1 340 65.6
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 4.5e-125 451.8 352 65.1
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.2e-124 449.5 340 64.1
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.9e-124 449.1 340 64.4
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 2.9e-124 449.1 359 63.0
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 3.8e-124 448.7 357 64.7
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 4.9e-124 448.4 358 64.0
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 4.9e-124 448.4 356 63.5
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 4.9e-124 448.4 347 64.6
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 6.5e-124 448.0 347 65.1
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 8.4e-124 447.6 340 64.4
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 8.4e-124 447.6 354 63.3
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 8.4e-124 447.6 352 63.9
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 1.1e-123 447.2 346 63.6
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 1.1e-123 447.2 362 62.4
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 1.4e-123 446.8 338 64.5
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 3.2e-123 445.7 351 63.8
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 4.2e-123 445.3 338 65.4
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 5.5e-123 444.9 346 65.3
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 1.2e-122 443.7 343 64.4
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.2e-122 443.7 351 63.5
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.2e-122 443.7 347 64.6
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 2.7e-122 442.6 360 63.1
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 3.5e-122 442.2 347 63.1
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 4.6e-122 441.8 360 63.1
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 4.6e-122 441.8 353 62.9
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 6.0e-122 441.4 352 62.8
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 6.0e-122 441.4 347 63.1
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 7.9e-122 441.0 338 64.2
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 2.3e-121 439.5 342 63.7
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 3.0e-121 439.1 344 63.4
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 3.9e-121 438.7 347 62.5
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 6.7e-121 438.0 360 63.6
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 6.7e-121 438.0 360 63.6
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 8.7e-121 437.6 345 65.2
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 1.1e-120 437.2 347 63.7
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.5e-120 436.8 344 65.1
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.5e-120 436.0 313 69.3
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 4.3e-120 435.3 359 64.3
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 5.7e-120 434.9 359 62.4
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 5.7e-120 434.9 340 64.4
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 2.2e-119 433.0 351 62.4
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 2.8e-119 432.6 370 61.1
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 8.2e-119 431.0 346 64.5
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 8.2e-119 431.0 344 62.2
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 8.2e-119 431.0 356 63.2
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.4e-118 430.3 342 63.5
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 1.8e-118 429.9 357 61.9
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 1.8e-118 429.9 358 62.0
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 3.1e-118 429.1 363 62.3
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 6.9e-118 427.9 367 60.5
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 6.9e-118 427.9 360 62.5
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.0e-116 424.1 357 60.8
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 1.3e-116 423.7 376 60.4
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 1.3e-116 423.7 376 60.4
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 2.9e-116 422.5 351 60.4
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 6.5e-116 421.4 354 60.5
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 4.2e-115 418.7 356 60.4
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 9.4e-115 417.5 359 58.8
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 9.4e-115 417.5 355 59.7
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 1.2e-114 417.2 359 58.8
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 2.7e-114 416.0 352 60.5
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 3.6e-114 415.6 357 59.4
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 7.9e-114 414.5 335 60.9
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 7.9e-114 414.5 343 60.1
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 7.9e-114 414.5 354 59.3
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 1.0e-113 414.1 359 58.2
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 1.0e-113 414.1 359 58.2
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 1.8e-113 413.3 356 59.3
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 1.8e-113 413.3 358 59.2
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 2.3e-113 412.9 355 59.4
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 2.3e-113 412.9 347 61.1
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.9e-113 412.1 350 61.4
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 8.8e-113 411.0 355 58.6
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 1.3e-111 407.1 344 59.3
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 2.8e-111 406.0 325 64.3
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 2.8e-111 406.0 427 52.9
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 3.4e-109 399.1 324 62.7
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 2.5e-107 392.9 322 61.5
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.2e-106 390.6 324 63.0
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 1.8e-105 386.7 336 57.7
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.0e-105 386.0 337 58.8
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 8.8e-105 384.4 313 63.3
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 9.7e-104 380.9 360 55.0
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 2.8e-103 379.4 350 55.4
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.7e-103 379.0 305 59.3
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 5.3e-102 375.2 309 60.2
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 6.5e-100 368.2 296 61.5
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 4.7e-98 362.1 337 53.1
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 6.7e-97 358.2 274 58.8
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 1.1e-94 350.9 303 56.8
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.4e-94 350.5 294 56.8
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 5.3e-94 348.6 339 53.1
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 2.6e-93 346.3 280 62.1
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 3.5e-93 345.9 227 74.0
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 3.8e-92 342.4 278 63.3
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 6.5e-92 341.7 298 55.7
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 3.2e-91 339.3 280 63.2
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 6.1e-90 335.1 292 53.8
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 3.0e-89 332.8 194 79.9
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 5.2e-89 332.0 194 78.9
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 4.4e-88 328.9 194 78.4
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.1e-83 314.3 348 49.1
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 3.4e-64 249.6 153 75.8
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.9e-54 217.2 126 79.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 2.4e-54 216.9 205 54.1
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 2.3e-44 183.7 202 48.5
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 2.1e-42 177.2 172 54.7
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 8.4e-39 165.2 100 76.0
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.7e-37 160.2 93 77.4
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 4.9e-31 139.4 153 50.3
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 1.0e-28 131.7 100 70.0
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 3.0e-28 130.2 137 48.2
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 4.8e-26 122.9 88 67.0
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.1e-25 121.7 149 44.3
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 2.2e-23 114.0 225 39.1
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 9.3e-22 108.6 73 64.4
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 1.2e-21 108.2 73 64.4
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 4.5e-16 89.7 103 44.7
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 7.9e-13 79.0 44 77.3
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 7.2e-06 55.8 69 44.9


User provided reference genes

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