Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 7.1e-170 600.5 304 100.0
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.3e-163 579.7 305 95.7
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 82.6
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 5.3e-141 504.6 305 82.6
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.2e-140 503.4 305 82.3
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.5e-140 503.1 305 79.3
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 1.7e-139 499.6 305 82.3
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 5.0e-139 498.0 305 81.3
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 8.5e-139 497.3 305 81.3
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 81.3
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.4e-138 496.5 305 78.0
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.9e-138 496.1 305 77.4
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.2e-138 495.4 305 81.6
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 3.2e-138 495.4 305 80.0
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 4.2e-138 495.0 305 81.0
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 4.2e-138 495.0 305 81.6
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.2e-137 493.4 305 77.4
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 79.7
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.1e-137 492.7 305 80.7
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.1e-137 492.7 305 80.0
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 4.7e-137 491.5 305 77.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 6.1e-137 491.1 305 80.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 7.9e-137 490.7 305 80.0
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 7.9e-137 490.7 305 76.1
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.0e-136 490.3 305 78.0
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.8e-136 489.6 305 80.0
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.3e-136 489.2 305 76.7
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 3.0e-136 488.8 305 79.3
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.9e-136 488.4 304 79.3
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 3.9e-136 488.4 305 80.3
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 6.7e-136 487.6 305 78.0
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 6.7e-136 487.6 305 78.0
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.1e-135 486.9 305 76.4
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 78.7
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 2.0e-135 486.1 304 78.9
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 2.0e-135 486.1 305 76.7
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 78.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 76.7
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 76.4
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 77.7
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 76.7
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 78.0
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 76.7
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 76.4
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 79.0
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 76.7
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 4.4e-135 485.0 305 77.4
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 5.7e-135 484.6 305 78.4
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 5.7e-135 484.6 305 76.4
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 5.7e-135 484.6 305 77.4
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 7.4e-135 484.2 305 78.4
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 9.7e-135 483.8 305 76.1
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.7e-135 483.8 305 76.7
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 9.7e-135 483.8 300 79.7
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.3e-134 483.4 305 78.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.3e-134 483.4 305 78.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.3e-134 483.4 305 79.0
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 6.3e-134 481.1 305 76.1
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.1e-133 480.3 305 78.4
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.4e-133 479.9 305 75.7
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.4e-133 479.2 305 77.7
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 3.1e-133 478.8 305 75.4
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 4.1e-133 478.4 305 75.4
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 7.0e-133 477.6 305 76.1
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 7.0e-133 477.6 305 77.7
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 7.0e-133 477.6 307 74.9
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.2e-132 476.9 305 75.4
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.5e-132 475.3 305 75.1
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 4.5e-132 474.9 305 74.4
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.3e-131 473.4 300 77.7
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.3e-131 473.4 303 78.2
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.7e-131 473.0 305 75.7
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.9e-131 472.2 303 74.6
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 5.0e-131 471.5 304 73.4
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.1e-130 470.3 326 73.3
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.1e-130 470.3 305 74.4
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.2e-130 468.4 305 74.4
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.5e-130 468.0 305 74.1
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 7.2e-130 467.6 305 73.4
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 9.4e-130 467.2 305 76.4
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 9.4e-130 467.2 301 77.4
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.2e-129 466.8 309 77.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 8.0e-129 464.2 308 73.4
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.0e-128 463.8 305 73.4
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.0e-128 463.8 305 73.4
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.8e-128 463.0 305 73.4
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 2.3e-128 462.6 303 75.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 6.7e-128 461.1 305 75.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 9.7e-127 457.2 305 72.8
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.3e-126 456.8 302 73.2
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.2e-126 456.1 307 74.3
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.8e-126 454.9 309 75.1
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.4e-125 453.4 372 62.6
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 7.0e-125 451.1 310 71.9
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.6e-124 449.9 330 67.9
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.6e-124 449.9 304 73.4
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.0e-124 449.5 304 73.7
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.0e-124 449.5 304 73.7
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 5.9e-124 448.0 312 69.9
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.0e-123 447.2 304 73.4
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 3.8e-123 445.3 312 69.6
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 6.5e-123 444.5 310 70.0
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 8.5e-123 444.1 306 70.3
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.5e-122 443.4 306 69.9
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.5e-122 443.4 306 69.9
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.5e-122 443.4 306 69.9
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.5e-122 443.4 312 70.2
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 4.2e-122 441.8 312 68.6
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 5.5e-122 441.4 312 69.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 7.5e-119 431.0 388 59.5
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.3e-115 420.2 306 66.7
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 6.1e-113 411.4 304 65.1
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.8e-110 402.5 304 64.1
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 5.4e-109 398.3 300 64.3
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.3e-107 392.9 301 62.8
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.4e-104 383.6 305 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.2e-103 380.6 303 61.4
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 2.3e-99 366.3 235 77.4
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.9e-99 365.5 261 73.6
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.0e-95 353.2 310 56.8
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 5.2e-88 328.6 225 70.2
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 6.4e-86 321.6 225 74.2
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 8.6e-83 311.2 207 72.0
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.2e-81 305.1 228 71.5
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.9e-69 266.9 186 69.4
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 6.0e-68 261.9 143 86.0
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.8e-64 250.4 149 77.2
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.9e-58 230.3 181 64.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.1e-48 198.0 300 42.7
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.5e-47 194.1 154 63.0
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.5e-47 194.1 153 62.7
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.0e-39 167.2 85 89.4
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.3e-38 164.5 83 85.5
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.9e-37 160.6 80 88.8
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.5e-37 160.2 79 88.6
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 2.5e-37 160.2 80 87.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 3.9e-35 152.9 298 33.9
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 6.7e-35 152.1 305 33.8
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 5.7e-34 149.1 204 44.6
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.5e-31 141.0 130 52.3
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.9e-29 134.0 79 78.5
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.5e-26 124.4 125 51.2
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 4.3e-26 122.9 82 68.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.2e-22 110.5 58 84.5
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.2e-21 106.7 64 78.1
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 7.4e-18 95.5 60 73.3
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 6.3e-17 92.4 293 31.7
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 6.3e-17 92.4 69 76.8
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 6.5e-14 82.4 244 27.9


User provided reference genes

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