Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 0.0e+00 1188.3 613 100.0
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 6.6e-191 671.4 631 58.2
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.9e-190 669.8 616 58.6
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.4e-188 662.9 612 56.9
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 1.2e-187 660.6 620 57.4
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 5.8e-187 658.3 634 55.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.9e-185 653.3 630 57.0
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.7e-184 649.4 612 57.8
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.7e-183 646.7 612 58.0
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 2.3e-183 646.4 629 56.4
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 3.9e-183 645.6 612 58.0
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 6.6e-183 644.8 624 56.2
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 2.5e-182 642.9 621 55.4
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-181 640.6 627 56.0
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 6.2e-181 638.3 625 54.6
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.8e-180 636.7 592 57.9
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.8e-180 636.7 617 54.6
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 4.0e-180 635.6 622 54.7
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 9.0e-180 634.4 629 55.5
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-179 633.6 623 55.1
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.0e-179 633.3 630 55.1
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.3e-178 630.6 617 56.6
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.9e-178 629.4 625 55.4
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.9e-178 628.6 631 54.2
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 8.4e-178 627.9 622 56.6
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.1e-177 627.5 619 54.4
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.9e-177 626.7 631 55.2
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.2e-176 624.0 626 54.2
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 2.3e-175 619.8 622 55.1
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.1e-174 617.5 614 54.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 4.3e-174 615.5 664 51.1
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 4.3e-174 615.5 621 53.9
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 7.3e-174 614.8 616 55.2
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 7.3e-174 614.8 612 53.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 7.3e-174 614.8 604 56.0
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.6e-173 613.6 645 52.9
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.8e-173 612.8 625 54.4
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.4e-172 609.8 619 54.0
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 3.1e-172 609.4 604 53.6
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 3.1e-172 609.4 617 53.2
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 5.3e-172 608.6 612 52.6
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 6.9e-172 608.2 602 54.7
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 9.9e-171 604.4 591 53.1
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.3e-170 604.0 607 53.5
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 3.8e-170 602.4 588 56.5
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 6.4e-170 601.7 603 53.6
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 6.4e-170 601.7 608 53.3
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.1e-169 600.9 639 53.1
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 3.2e-169 599.4 611 54.2
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 7.1e-169 598.2 609 53.5
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.3e-169 597.8 646 52.0
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.2e-168 597.4 603 53.9
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.7e-168 596.3 610 52.5
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.3e-167 594.0 599 53.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 3.0e-167 592.8 594 52.4
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 6.7e-167 591.7 598 55.2
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 6.7e-167 591.7 628 51.1
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 8.7e-167 591.3 612 53.9
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.5e-166 590.5 607 52.4
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 1.9e-166 590.1 621 50.6
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.5e-166 589.7 613 53.2
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 3.3e-166 589.3 595 55.0
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 4.3e-166 589.0 580 54.5
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 9.6e-166 587.8 614 54.2
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.1e-164 584.3 614 51.6
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-164 583.9 598 52.3
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.8e-164 583.6 589 53.8
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 5.3e-164 582.0 597 53.1
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.2e-163 580.9 620 50.5
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.2e-163 580.9 620 50.5
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.2e-163 580.9 631 52.5
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 2.0e-163 580.1 598 53.8
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.6e-163 579.7 599 53.4
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.4e-163 579.3 630 52.5
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.0e-162 577.8 594 53.5
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.3e-162 577.4 581 54.4
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.7e-162 577.0 622 51.3
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 2.2e-162 576.6 614 50.2
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.2e-162 576.6 599 53.6
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 8.4e-162 574.7 596 52.0
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 2.5e-161 573.2 587 51.8
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 9.3e-161 571.2 595 51.3
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 9.3e-161 571.2 607 50.9
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.7e-160 569.7 610 50.0
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 3.5e-160 569.3 606 50.3
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 4.6e-160 568.9 594 50.2
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.0e-159 567.8 638 50.6
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 2.3e-159 566.6 606 50.2
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 3.0e-159 566.2 639 49.3
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.5e-158 563.9 636 51.3
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 3.3e-158 562.8 616 51.9
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 3.1e-156 556.2 627 50.2
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.0e-155 553.5 588 53.2
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 2.6e-155 553.1 611 51.4
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 4.2e-153 545.8 613 49.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.6e-152 543.9 624 50.8
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 2.3e-151 540.0 620 50.6
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.0e-142 510.4 624 50.5
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 6.3e-141 505.4 559 51.0
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.3e-141 505.4 620 48.5
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.0e-139 500.4 604 48.0
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 2.0e-139 500.4 507 53.3
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.9e-138 496.5 595 47.2
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.6e-134 483.4 594 46.5
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 2.2e-133 480.3 579 46.6
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 2.4e-132 476.9 588 45.9
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 4.1e-132 476.1 507 51.3
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 5.5e-129 465.7 476 55.5
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.8e-125 453.4 649 43.0
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 2.4e-124 450.3 630 46.8
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.0e-118 430.6 472 52.5
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.5e-113 413.7 593 42.8
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.2e-110 404.8 595 43.0
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.1e-97 361.7 537 42.5
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.2e-86 325.1 394 46.7
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 3.2e-84 317.0 503 40.6
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 9.9e-78 295.4 369 48.5
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 2.9e-77 293.9 261 61.3
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 7.6e-70 269.2 361 44.0
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.1e-68 265.4 298 53.4
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.1e-67 261.2 349 45.3
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.1e-65 255.4 365 43.8
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 2.4e-55 221.1 293 40.6
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 3.4e-54 217.2 292 42.5
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 2.5e-49 201.1 200 51.0
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.4e-49 199.5 253 43.5
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.3e-48 198.7 198 50.0
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.0e-46 191.4 191 48.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.7e-45 188.3 119 77.3
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 3.2e-44 184.1 227 44.1
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 2.4e-39 167.9 195 44.6
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.4e-38 164.1 180 47.2
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 7.6e-38 162.9 288 35.4
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.9e-36 158.3 106 70.8
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 7.2e-36 156.4 113 68.1
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.7e-35 154.5 169 49.7
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.0e-34 152.5 153 49.7
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.3e-33 147.5 176 51.1
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 3.3e-33 147.5 98 74.5
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.8e-31 141.7 146 55.5
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.8e-31 141.7 118 61.9
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.1e-31 141.0 291 33.3
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 3.4e-30 137.5 130 60.0
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.8e-26 125.2 167 40.7
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 3.3e-25 120.9 87 73.6
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 7.4e-25 119.8 87 73.6
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.1e-23 115.9 126 56.3
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 4.5e-22 110.5 65 75.4
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 6.5e-21 106.7 113 56.6
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 7.2e-20 103.2 180 34.4
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 6.1e-19 100.1 105 41.0
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 7.9e-19 99.8 74 74.3
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.1e-17 95.9 70 65.7
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 4.4e-17 94.0 175 34.3
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 5.7e-17 93.6 106 46.2
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 2.4e-15 88.2 69 68.1
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 3.5e-14 84.3 138 40.6
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 5.0e-13 80.5 73 54.8
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 4.2e-12 77.4 120 45.0
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.2e-11 75.9 89 46.1
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.8e-10 72.0 139 29.5
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 7.5e-09 66.6 49 63.3
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.2e-08 65.1 123 35.0
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 2.4e-07 61.6 48 58.3


User provided reference genes

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