Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.5e-89 332.8 165 100.0
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.6e-83 312.8 165 93.9
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 7.5e-65 250.8 162 75.3
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.9e-64 248.1 152 78.9
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 6.4e-64 247.7 161 75.8
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 8.3e-64 247.3 152 77.0
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.1e-63 246.9 156 76.9
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.4e-63 245.7 160 75.0
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.1e-63 245.0 162 74.1
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.1e-63 245.0 151 79.5
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 9.2e-63 243.8 152 77.6
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 9.2e-63 243.8 162 73.5
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-62 243.4 152 77.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.2e-62 243.4 152 77.6
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.6e-62 243.0 161 73.3
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 2.0e-62 242.7 152 77.0
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.7e-62 242.3 151 78.8
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 3.5e-62 241.9 151 77.5
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 4.6e-62 241.5 159 74.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 4.6e-62 241.5 162 73.5
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 4.6e-62 241.5 160 75.0
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 5.9e-62 241.1 165 73.3
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 5.9e-62 241.1 152 75.0
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 5.9e-62 241.1 152 75.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 5.9e-62 241.1 152 75.7
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 5.9e-62 241.1 151 78.1
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 7.8e-62 240.7 165 72.7
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 7.8e-62 240.7 165 73.3
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 7.8e-62 240.7 151 77.5
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 7.8e-62 240.7 163 74.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.0e-61 240.4 160 73.1
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.3e-61 240.0 163 74.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.3e-61 240.0 150 77.3
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.3e-61 240.0 153 78.4
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-61 239.6 165 72.1
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-61 239.6 154 76.6
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-61 239.6 165 72.1
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.7e-61 239.6 160 73.1
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.7e-61 239.6 165 72.1
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.7e-61 239.6 158 73.4
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.7e-61 239.6 158 73.4
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 2.3e-61 239.2 163 73.0
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 2.3e-61 239.2 163 73.0
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.3e-61 239.2 161 72.7
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.3e-61 239.2 162 73.5
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 3.0e-61 238.8 159 74.2
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 3.9e-61 238.4 163 73.0
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.9e-61 238.4 163 72.4
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 3.9e-61 238.4 156 73.7
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 5.0e-61 238.0 163 73.0
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 5.0e-61 238.0 163 73.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 5.0e-61 238.0 154 76.0
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 5.0e-61 238.0 154 76.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 5.0e-61 238.0 159 74.2
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 5.0e-61 238.0 156 73.1
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 5.0e-61 238.0 154 75.3
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 6.6e-61 237.7 159 73.6
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 6.6e-61 237.7 158 73.4
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 8.6e-61 237.3 160 73.1
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 8.6e-61 237.3 164 72.0
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.1e-60 236.9 156 74.4
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.1e-60 236.9 161 72.7
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.5e-60 236.5 164 72.6
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.5e-60 236.5 162 72.8
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.9e-60 236.1 162 72.8
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.9e-60 236.1 152 75.0
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.9e-60 236.1 156 71.8
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.9e-60 236.1 161 72.7
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.5e-60 235.7 157 72.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 2.5e-60 235.7 162 72.8
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.5e-60 235.7 164 72.6
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.5e-60 235.7 162 71.0
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.3e-60 235.3 152 74.3
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 3.3e-60 235.3 152 74.3
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.3e-60 235.3 158 72.8
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 3.3e-60 235.3 156 73.1
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.3e-60 235.0 154 74.0
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 4.3e-60 235.0 147 76.9
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.3e-60 235.0 164 71.3
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.3e-60 235.0 151 76.2
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.3e-60 235.0 151 76.2
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 4.3e-60 235.0 155 74.2
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 4.3e-60 235.0 156 73.7
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 5.6e-60 234.6 164 71.3
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 5.6e-60 234.6 172 69.8
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.3e-60 234.2 152 74.3
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.3e-60 234.2 152 73.7
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 7.3e-60 234.2 164 71.3
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.3e-60 234.2 164 71.3
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.3e-60 234.2 164 71.3
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 7.3e-60 234.2 151 75.5
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 9.5e-60 233.8 154 74.0
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.5e-60 233.8 164 70.7
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.5e-60 233.8 164 70.7
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-59 233.4 155 72.9
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.2e-59 233.4 154 74.7
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.2e-59 233.4 153 72.5
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-59 233.0 164 71.3
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-59 233.0 164 70.7
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.8e-59 232.3 154 74.0
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 3.6e-59 231.9 155 74.2
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 4.7e-59 231.5 147 74.1
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 4.7e-59 231.5 158 72.2
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.0e-58 230.3 162 70.4
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.0e-58 230.3 149 72.5
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.4e-58 229.9 154 73.4
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.8e-58 229.6 163 69.9
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.8e-58 229.6 173 68.8
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 3.1e-58 228.8 154 71.4
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 3.1e-58 228.8 152 72.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 3.1e-58 228.8 157 71.3
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.2e-58 228.0 151 73.5
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 6.8e-58 227.6 159 70.4
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 8.9e-58 227.3 156 69.9
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.9e-58 227.3 164 69.5
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.2e-57 226.9 152 73.7
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.2e-57 226.9 154 72.1
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 2.0e-57 226.1 159 72.3
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 2.0e-57 226.1 152 71.7
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.6e-57 225.7 162 68.5
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.6e-57 225.7 159 71.7
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 2.6e-57 225.7 159 71.7
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 4.4e-57 224.9 159 71.7
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 5.8e-57 224.6 157 69.4
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 7.5e-57 224.2 159 71.1
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 7.5e-57 224.2 159 71.1
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.3e-56 223.4 158 68.4
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.7e-56 223.0 159 71.1
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.7e-56 223.0 154 72.7
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.9e-56 221.5 148 70.9
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 6.4e-56 221.1 164 68.3
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 6.4e-56 221.1 154 72.1
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.4e-55 219.9 154 71.4
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 2.4e-55 219.2 164 68.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 5.4e-55 218.0 138 73.9
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 7.8e-54 214.2 138 72.5
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 8.6e-53 210.7 208 54.8
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 9.5e-52 207.2 143 67.8
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 2.3e-50 202.6 135 71.9
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 4.9e-48 194.9 158 62.7
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 6.6e-45 184.5 122 70.5
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.3e-44 181.8 163 58.9
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.3e-44 181.8 120 71.7
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 5.6e-44 181.4 135 65.2
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 6.8e-42 174.5 134 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.2e-41 173.7 135 63.7
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 3.4e-41 172.2 130 65.4
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.2e-38 163.7 135 59.3
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 7.8e-38 161.0 109 78.0
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.9e-36 156.4 111 67.6
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.8e-34 149.8 91 79.1
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.5e-33 146.7 155 52.3
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.4e-31 139.4 140 50.0
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 4.2e-31 138.7 120 55.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 6.0e-30 134.8 89 77.5
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 9.6e-28 127.5 87 73.6
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.6e-27 125.6 163 50.3
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.6e-25 119.4 97 62.9
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.2e-24 116.3 99 56.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.9e-24 115.9 106 62.3
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-20 103.2 124 41.1
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 5.6e-20 101.7 71 69.0
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-18 97.1 123 39.8
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-18 97.1 123 39.8
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.8e-18 96.7 55 72.7
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.0e-18 95.5 121 39.7
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 3.8e-16 89.0 96 46.9
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 3.8e-16 89.0 96 46.9
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.4e-15 86.3 158 39.9
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-14 83.2 56 66.1
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.3e-13 80.5 95 40.0
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.8e-13 80.1 55 69.1
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 3.7e-11 72.4 95 45.3
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.1e-10 70.9 41 68.3
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 3.4e-09 65.9 54 55.6
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.8e-09 65.1 47 53.2


User provided reference genes

Program Settings