Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 4.2e-142 508.1 267 100.0
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.4e-105 386.7 219 90.4
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.8e-68 263.5 231 54.5
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 5.3e-68 261.9 238 55.0
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 2.0e-67 260.0 240 55.8
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 2.0e-67 260.0 233 55.4
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.7e-66 256.9 238 53.8
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 4.9e-66 255.4 253 51.8
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 6.4e-66 255.0 243 54.7
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.1e-65 254.2 240 55.0
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.4e-65 253.8 228 56.6
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 3.2e-65 252.7 238 51.3
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.2e-65 252.3 240 53.3
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.2e-64 250.8 240 52.9
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.1e-64 250.0 237 53.2
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.7e-64 249.6 251 53.4
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 2.7e-64 249.6 232 52.6
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.5e-64 249.2 240 52.5
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 7.9e-64 248.1 220 56.4
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.3e-63 247.3 236 53.4
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.3e-63 247.3 253 49.0
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.8e-63 246.9 236 53.0
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.8e-63 246.9 236 53.4
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 6.7e-63 245.0 232 51.3
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 8.7e-63 244.6 253 49.0
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 1.5e-62 243.8 240 52.5
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 7.4e-62 241.5 229 51.5
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 7.4e-62 241.5 255 47.8
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 1.6e-61 240.4 240 50.8
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 2.8e-61 239.6 246 49.2
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.8e-61 238.8 240 54.2
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.1e-60 237.7 240 51.7
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.8e-60 236.9 244 51.6
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.8e-60 236.9 254 50.0
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 3.1e-60 236.1 234 50.4
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.1e-60 236.1 236 50.8
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 4.0e-60 235.7 196 59.7
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 5.3e-60 235.3 229 53.7
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 5.3e-60 235.3 229 49.8
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 5.3e-60 235.3 229 49.3
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.2e-59 234.2 240 52.9
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 3.4e-59 232.6 242 48.8
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 4.5e-59 232.3 207 56.5
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 2.2e-58 229.9 229 51.5
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.9e-58 229.6 229 48.9
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 3.8e-58 229.2 233 51.1
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.8e-58 229.2 227 49.3
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 3.8e-58 229.2 227 49.3
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.4e-57 227.3 223 49.3
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.4e-57 227.3 227 48.9
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.9e-57 226.9 240 52.1
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 7.1e-57 224.9 226 49.6
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 2.1e-56 223.4 224 50.9
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 6.0e-56 221.9 195 57.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.8e-55 220.3 198 53.5
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 6.7e-55 218.4 231 48.5
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 8.7e-55 218.0 200 52.5
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.9e-54 216.9 235 48.9
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 7.4e-54 214.9 267 41.6
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 9.6e-54 214.5 235 48.5
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 4.8e-53 212.2 235 47.7
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 4.8e-53 212.2 216 50.5
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 6.3e-53 211.8 256 47.7
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 3.1e-52 209.5 198 51.5
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 4.1e-52 209.1 235 47.2
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 4.1e-52 209.1 235 47.2
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 6.9e-52 208.4 235 46.8
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 6.9e-52 208.4 231 47.2
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 9.0e-52 208.0 235 47.2
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.2e-51 207.6 248 44.8
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.5e-51 207.2 235 46.8
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 2.0e-51 206.8 231 46.8
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.0e-51 206.8 235 46.4
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.0e-51 206.8 235 46.4
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.6e-51 204.9 226 46.0
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 3.8e-50 202.6 240 45.8
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.5e-50 201.8 195 49.7
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.4e-49 200.7 261 43.3
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.4e-49 200.7 231 47.6
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 3.2e-49 199.5 201 50.7
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 9.3e-49 198.0 196 50.0
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 7.9e-48 194.9 240 45.0
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.3e-47 194.1 243 45.7
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.8e-47 193.7 186 51.6
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 5.7e-46 188.7 240 44.2
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.6e-45 187.2 241 42.7
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.6e-45 187.2 296 39.2
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 5.3e-44 182.2 240 43.3
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.7e-42 177.2 198 48.5
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.2e-42 176.8 195 47.7
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 8.5e-42 174.9 179 48.6
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-40 170.6 240 40.4
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 3.6e-40 169.5 233 40.8
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.4e-39 167.5 196 42.3
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 3.7e-37 159.5 236 38.6
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 8.2e-37 158.3 235 39.1
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 9.1e-36 154.8 272 37.1
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-35 154.5 221 41.6
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.2e-34 150.2 227 38.8
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 8.5e-34 148.3 235 36.2
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.1e-33 147.9 230 37.8
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.4e-33 147.5 245 36.7
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 4.7e-32 142.5 157 42.0
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 3.0e-31 139.8 110 62.7
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 3.9e-31 139.4 120 55.8
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-30 137.9 239 33.5
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 3.3e-30 136.3 248 34.3
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-27 127.9 223 35.0
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-27 127.5 205 35.1
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.6e-27 127.5 104 56.7
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.7e-26 124.0 119 50.4
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 9.4e-25 118.2 227 34.4
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-24 117.9 195 34.9
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 3.6e-24 116.3 150 41.3
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 8.0e-24 115.2 237 35.9
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 5.2e-23 112.5 143 45.5
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 5.7e-22 109.0 104 51.0
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 4.8e-21 105.9 108 47.2
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 7.0e-20 102.1 123 48.8
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.1e-20 101.7 151 39.1
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 5.9e-19 99.0 186 34.9
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.5e-17 93.6 106 47.2
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 2.7e-16 90.1 106 41.5
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 5.7e-14 82.4 104 41.3
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.1e-12 78.2 126 38.9
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.4e-12 77.8 122 40.2
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 5.4e-12 75.9 108 44.4
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-10 70.9 71 49.3
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.9e-10 70.1 99 40.4
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 7.2e-09 65.5 83 43.4
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.7e-08 62.8 59 45.8


User provided reference genes

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