Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.3e-92 343.2 187 100.0
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 9.2e-27 124.4 157 52.9
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 2.7e-26 122.9 172 51.2
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 1.1e-24 117.5 123 47.2
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 1.1e-24 117.5 138 55.8
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.5e-24 117.1 126 60.3
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 1.5e-24 117.1 142 55.6
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 1.5e-24 117.1 126 57.1
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.3e-24 115.5 132 54.5
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 4.3e-24 115.5 155 50.3
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 5.6e-24 115.2 132 53.8
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.6e-24 115.2 132 53.8
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.6e-24 115.2 132 53.8
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.6e-24 115.2 132 53.8
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 7.3e-24 114.8 129 55.0
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 9.5e-24 114.4 135 54.1
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 1.2e-23 114.0 119 64.7
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.6e-23 113.6 135 51.9
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.1e-23 113.2 135 54.8
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.1e-23 113.2 135 54.8
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.1e-23 113.2 135 54.8
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 2.1e-23 113.2 118 61.9
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 8.1e-23 111.3 125 58.4
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 8.1e-23 111.3 114 58.8
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.3e-22 109.8 135 56.3
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 3.1e-22 109.4 187 44.4
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 6.8e-22 108.2 138 50.7
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 6.8e-22 108.2 123 53.7
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 8.9e-22 107.8 152 46.7
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 8.9e-22 107.8 161 49.1
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 8.9e-22 107.8 128 55.5
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 1.5e-21 107.1 122 49.2
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 2.6e-21 106.3 135 45.2
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 3.4e-21 105.9 125 56.0
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 3.4e-21 105.9 130 55.4
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 3.4e-21 105.9 122 54.1
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 3.4e-21 105.9 154 50.0
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 3.4e-21 105.9 154 50.0
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 4.4e-21 105.5 120 49.2
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 5.8e-21 105.1 131 46.6
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 7.5e-21 104.8 128 53.9
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 9.8e-21 104.4 120 56.7
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 9.8e-21 104.4 147 49.0
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 9.8e-21 104.4 147 46.3
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 1.7e-20 103.6 130 52.3
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 1.7e-20 103.6 135 44.4
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 2.2e-20 103.2 127 48.8
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 3.7e-20 102.4 121 53.7
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 3.7e-20 102.4 136 53.7
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 8.3e-20 101.3 123 56.9
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 1.1e-19 100.9 144 46.5
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 1.4e-19 100.5 126 47.6
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 1.9e-19 100.1 133 45.9
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 2.4e-19 99.8 132 52.3
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 2.4e-19 99.8 142 41.5
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 2.4e-19 99.8 131 42.7
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 2.4e-19 99.8 129 52.7
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 3.2e-19 99.4 178 42.7
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 3.2e-19 99.4 178 42.7
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 4.1e-19 99.0 129 51.9
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 7.1e-19 98.2 134 53.0
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 7.1e-19 98.2 133 53.4
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 9.2e-19 97.8 131 51.1
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 9.2e-19 97.8 178 42.7
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 9.2e-19 97.8 135 53.3
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 9.2e-19 97.8 142 48.6
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 1.2e-18 97.4 134 50.7
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 1.2e-18 97.4 142 47.9
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.2e-18 97.4 136 55.9
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.6e-18 97.1 137 51.1
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 2.1e-18 96.7 135 51.9
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 2.1e-18 96.7 134 50.7
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 2.1e-18 96.7 186 37.6
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 2.7e-18 96.3 182 42.9
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 4.6e-18 95.5 141 50.4
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 6.0e-18 95.1 179 39.7
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 6.0e-18 95.1 127 45.7
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.0e-17 94.4 135 49.6
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 1.3e-17 94.0 130 44.6
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 3.0e-17 92.8 97 59.8
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 5.1e-17 92.0 144 45.8
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 8.6e-17 91.3 131 41.2
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 8.6e-17 91.3 137 45.3
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 1.1e-16 90.9 193 43.5
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 1.9e-16 90.1 186 36.0
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 3.3e-16 89.4 132 51.5
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 3.3e-16 89.4 130 48.5
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 4.3e-16 89.0 132 50.8
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 5.6e-16 88.6 122 45.9
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 7.3e-16 88.2 189 41.3
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.3e-16 88.2 140 47.9
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 7.3e-16 88.2 139 50.4
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 1.6e-15 87.0 118 45.8
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 2.1e-15 86.7 125 47.2
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 2.1e-15 86.7 133 46.6
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.8e-15 86.3 130 44.6
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 4.7e-15 85.5 136 49.3
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 6.2e-15 85.1 99 52.5
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 1.1e-14 84.3 114 50.9
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 1.1e-14 84.3 125 50.4
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 1.4e-14 84.0 129 45.7
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 1.8e-14 83.6 157 43.3
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 1.8e-14 83.6 143 44.1
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.3e-14 83.2 122 36.9
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 4.0e-14 82.4 137 47.4
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 4.0e-14 82.4 137 47.4
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 4.0e-14 82.4 137 47.4
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 5.2e-14 82.0 127 44.9
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 6.8e-14 81.6 128 43.8
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 6.8e-14 81.6 125 50.4
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 3.4e-13 79.3 135 45.9
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 3.4e-13 79.3 128 46.1
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 5.8e-13 78.6 135 45.9
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 5.8e-13 78.6 127 50.4
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 9.9e-13 77.8 107 44.9
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 1.7e-12 77.0 125 46.4
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 2.2e-12 76.6 128 41.4
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 6.4e-12 75.1 130 40.0
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 5.4e-11 72.0 95 56.8
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 7.1e-11 71.6 158 39.9
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 7.1e-11 71.6 127 44.1
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.2e-10 70.9 147 36.7
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 1.2e-10 70.9 134 40.3
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 2.1e-10 70.1 124 42.7
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 2.7e-10 69.7 122 42.6
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 2.7e-10 69.7 130 41.5
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 2.3e-09 66.6 120 44.2
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 3.0e-09 66.2 47 68.1
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 3.0e-09 66.2 121 41.3
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.9e-09 65.9 108 44.4
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 1.1e-08 64.3 100 50.0
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 1.1e-08 64.3 52 57.7
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.1e-08 64.3 75 53.3
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 1.5e-08 63.9 122 47.5
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 1.9e-08 63.5 173 34.1
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.9e-08 63.5 122 35.2
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 3.3e-08 62.8 122 43.4
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 3.3e-08 62.8 120 38.3
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 4.3e-08 62.4 120 44.2
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 7.3e-08 61.6 110 52.7
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 7.3e-08 61.6 121 43.8
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 7.3e-08 61.6 126 38.1
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 7.3e-08 61.6 122 41.8
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.1e-06 57.8 116 44.0
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.1e-06 56.2 36 72.2
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 8.9e-06 54.7 50 46.0


User provided reference genes

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