Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 7.8e-139 497.7 363 100.0
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.7e-123 446.0 394 79.9
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.1e-63 246.1 337 59.3
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 7.7e-62 241.9 340 62.4
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 1.7e-61 240.7 337 65.3
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 6.5e-61 238.8 325 66.2
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 8.5e-61 238.4 329 62.6
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 3.2e-60 236.5 349 62.8
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.6e-59 234.2 330 60.9
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.6e-59 233.0 330 64.2
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 4.7e-59 232.6 324 64.2
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.0e-58 231.5 338 68.9
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.8e-58 230.7 323 67.8
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 2.3e-58 230.3 354 60.5
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 2.3e-58 230.3 320 63.4
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 3.0e-58 229.9 323 65.0
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.9e-58 229.6 322 57.5
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 6.7e-58 228.8 328 63.4
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 6.7e-58 228.8 328 63.4
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 7.4e-57 225.3 324 67.0
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 4.8e-56 222.6 323 53.6
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 6.3e-56 222.2 323 67.2
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 6.3e-56 222.2 323 69.0
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 6.3e-56 222.2 337 58.2
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 8.2e-56 221.9 324 61.7
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 8.2e-56 221.9 324 61.7
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 8.2e-56 221.9 328 66.2
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 8.2e-56 221.9 326 66.6
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 8.2e-56 221.9 310 72.3
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 2.4e-55 220.3 325 66.8
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 3.1e-55 219.9 347 59.9
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 4.1e-55 219.5 342 65.8
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 5.3e-55 219.2 347 60.2
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 5.3e-55 219.2 327 53.5
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 1.2e-54 218.0 341 57.2
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 1.5e-54 217.6 339 61.1
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.0e-54 217.2 331 62.2
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.0e-53 214.9 333 65.5
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.7e-53 214.2 322 62.4
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.9e-53 213.4 322 57.5
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 2.9e-53 213.4 338 60.4
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.8e-53 213.0 322 57.8
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 3.8e-53 213.0 346 65.3
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 5.0e-53 212.6 338 56.8
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 6.5e-53 212.2 337 55.5
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 6.5e-53 212.2 337 55.8
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.4e-52 211.1 339 60.5
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 3.2e-52 209.9 330 59.4
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 7.2e-52 208.8 341 57.8
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 9.4e-52 208.4 317 68.1
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 9.4e-52 208.4 331 65.6
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.2e-51 208.0 364 61.3
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 3.6e-51 206.5 328 65.9
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.7e-51 206.1 324 62.7
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 8.0e-51 205.3 344 58.7
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 1.0e-50 204.9 338 64.2
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.4e-50 204.5 351 60.1
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 1.8e-50 204.1 322 66.5
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 1.8e-50 204.1 317 67.2
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 3.0e-50 203.4 326 61.7
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 5.2e-50 202.6 335 53.7
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 1.1e-49 201.4 365 61.4
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.5e-49 201.1 332 63.0
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 2.0e-49 200.7 310 58.7
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 2.6e-49 200.3 343 50.1
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.3e-49 199.9 334 59.3
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.3e-49 199.9 324 61.4
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 5.7e-49 199.1 324 61.7
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 7.4e-49 198.7 324 60.8
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 7.4e-49 198.7 346 44.2
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 9.7e-49 198.4 326 65.3
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-48 198.0 324 61.4
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-48 198.0 324 61.4
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 1.3e-48 198.0 324 61.4
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 1.3e-48 198.0 324 61.4
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 1.3e-48 198.0 337 65.0
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 1.7e-48 197.6 353 56.1
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 2.2e-48 197.2 330 63.3
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 8.2e-48 195.3 324 60.5
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 8.2e-48 195.3 307 65.8
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.4e-47 194.5 291 66.3
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 2.4e-47 193.7 358 53.6
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 4.1e-47 193.0 324 60.5
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 9.1e-47 191.8 342 55.8
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 5.9e-46 189.1 314 62.1
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.0e-45 188.3 352 59.1
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.0e-45 188.3 366 45.9
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 2.9e-45 186.8 342 63.5
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.8e-45 186.4 307 60.3
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 3.8e-45 186.4 329 61.4
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 5.0e-45 186.0 310 63.2
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 8.5e-45 185.3 324 61.1
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 8.5e-45 185.3 324 61.1
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 5.5e-44 182.6 330 59.7
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 7.2e-44 182.2 330 54.8
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 7.2e-44 182.2 330 54.8
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 7.2e-44 182.2 336 58.6
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.6e-43 181.0 285 64.6
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.6e-43 181.0 324 64.5
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 2.7e-43 180.3 334 64.4
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 4.7e-43 179.5 343 54.8
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 8.0e-43 178.7 323 58.5
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.0e-42 178.3 342 61.7
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.8e-42 177.6 336 61.9
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 2.3e-42 177.2 305 64.6
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.3e-42 177.2 324 60.8
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 3.0e-42 176.8 328 62.2
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 5.2e-42 176.0 294 61.6
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 6.7e-42 175.6 294 61.9
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 6.7e-42 175.6 332 58.1
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 4.4e-41 172.9 328 63.1
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 5.7e-41 172.6 347 54.2
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 7.5e-41 172.2 337 63.5
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 9.7e-41 171.8 332 50.3
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 1.7e-40 171.0 328 63.1
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 2.2e-40 170.6 333 61.6
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 2.8e-40 170.2 343 62.7
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 2.8e-40 170.2 347 52.2
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 3.7e-40 169.9 365 57.5
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 6.3e-40 169.1 358 52.8
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 5.3e-39 166.0 319 62.7
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.2e-38 164.9 286 61.5
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.6e-38 164.5 318 63.5
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.5e-38 162.9 324 57.4
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-37 161.4 330 61.2
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 1.3e-37 161.4 330 61.2
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 1.3e-37 161.4 320 54.7
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.8e-37 159.8 317 61.5
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 6.5e-37 159.1 333 51.4
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 1.1e-36 158.3 304 65.1
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 7.2e-36 155.6 354 53.7
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 7.2e-36 155.6 330 60.6
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 9.4e-36 155.2 329 57.8
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 9.4e-36 155.2 324 56.5
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 2.1e-35 154.1 317 54.9
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 8.0e-35 152.1 358 54.7
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 8.0e-35 152.1 263 71.9
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 5.2e-34 149.4 321 43.3
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 1.5e-33 147.9 333 58.3
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 2.0e-33 147.5 351 57.3
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 2.8e-32 143.7 349 50.1
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 4.8e-32 142.9 283 60.1
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 4.8e-32 142.9 317 55.5
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 4.8e-32 142.9 335 52.2
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 1.8e-31 141.0 325 57.2
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 3.1e-31 140.2 287 46.3
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 4.1e-31 139.8 320 45.6
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 2.7e-30 137.1 318 56.9
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 2.7e-30 137.1 318 56.3
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 7.7e-30 135.6 322 49.7
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.0e-29 135.2 330 43.3
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.0e-29 135.2 209 53.1
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 1.0e-29 135.2 328 55.2
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.5e-28 131.3 324 58.0
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 2.5e-28 130.6 215 55.3
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 3.3e-28 130.2 318 58.2
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 4.2e-28 129.8 208 56.7
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 4.2e-28 129.8 336 43.8
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 5.5e-28 129.4 318 55.0
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 2.8e-27 127.1 311 36.0
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 6.1e-27 125.9 324 52.8
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 8.0e-27 125.6 347 50.4
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 8.0e-27 125.6 347 50.4
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 8.0e-27 125.6 347 50.4
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 1.4e-26 124.8 324 52.5
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 1.8e-26 124.4 208 54.3
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 5.2e-26 122.9 206 51.9
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 5.2e-26 122.9 206 51.9
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 5.2e-26 122.9 306 56.5
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 5.2e-26 122.9 199 57.3
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 6.8e-26 122.5 164 48.8
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 6.8e-26 122.5 329 51.7
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 2.0e-25 120.9 209 54.5
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 5.7e-25 119.4 206 51.5
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 6.3e-24 115.9 324 53.1
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.8e-23 114.4 331 50.8
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 4.1e-23 113.2 318 52.2
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 3.5e-22 110.2 235 60.4
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.9e-20 104.4 163 50.3
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.6e-17 94.0 229 64.2
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 6.4e-16 89.4 92 53.3
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.2e-14 85.1 78 55.1
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 2.0e-09 67.8 132 47.7
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 2.2e-08 64.3 327 45.3
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 6.4e-08 62.8 334 39.8
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.4e-07 61.6 322 48.8


User provided reference genes

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