Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.0e-100 368.6 203 100.0
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.9e-47 192.2 128 85.2
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 9.0e-36 154.5 195 48.7
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.2e-35 154.1 199 47.2
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.3e-34 150.6 200 47.0
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.2e-34 149.8 195 50.8
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.5e-34 148.3 199 44.7
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 8.4e-34 147.9 198 47.5
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.5e-33 146.4 197 48.2
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.1e-32 143.3 197 48.2
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.7e-32 142.9 202 42.6
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 2.7e-32 142.9 204 44.6
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 3.5e-32 142.5 198 46.0
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 4.6e-32 142.1 204 46.6
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 7.9e-32 141.4 199 46.7
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.3e-31 140.6 193 45.1
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.3e-31 140.6 214 43.9
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.8e-31 140.2 207 40.1
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.1e-31 138.7 200 45.0
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 5.7e-30 135.2 196 42.9
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.7e-30 135.2 210 39.0
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 5.7e-30 135.2 199 45.7
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 9.6e-30 134.4 209 42.1
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.6e-29 133.7 200 43.5
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.8e-29 132.9 197 43.1
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.8e-29 132.9 217 40.6
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.1e-28 131.0 197 42.6
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.4e-28 129.8 194 43.3
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.1e-28 129.4 196 42.9
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 5.3e-28 128.6 202 38.6
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 5.3e-28 128.6 196 42.3
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.5e-27 127.1 201 40.8
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.5e-27 127.1 200 41.5
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.6e-27 126.3 209 43.5
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.6e-27 126.3 208 40.9
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.6e-27 126.3 211 41.7
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 3.4e-27 125.9 209 41.1
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 4.5e-27 125.6 198 40.9
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 5.9e-27 125.2 202 42.1
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.9e-27 125.2 211 39.8
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 7.6e-27 124.8 200 43.5
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.0e-26 124.4 221 42.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.0e-26 124.4 211 40.8
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.0e-26 124.4 214 39.7
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.0e-26 124.4 199 42.2
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.7e-26 123.6 198 43.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.2e-26 123.2 193 38.9
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 2.9e-26 122.9 195 41.5
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.8e-26 122.5 213 38.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.0e-26 122.1 221 39.4
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 6.5e-26 121.7 192 42.7
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.5e-26 121.7 197 42.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 6.5e-26 121.7 197 41.6
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 4.2e-25 119.0 226 36.3
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 5.5e-25 118.6 208 41.3
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.5e-25 118.6 198 44.9
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.5e-25 118.6 198 44.9
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 9.3e-25 117.9 195 38.5
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.2e-24 117.5 201 36.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.2e-24 117.5 217 41.0
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.2e-24 117.5 196 42.9
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.2e-24 117.5 196 42.9
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 2.7e-24 116.3 222 39.6
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.5e-24 115.9 196 42.3
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 4.6e-24 115.5 194 36.6
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 4.6e-24 115.5 214 37.9
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.6e-24 115.5 211 40.3
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 7.9e-24 114.8 218 38.1
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 7.9e-24 114.8 199 38.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 7.9e-24 114.8 195 37.9
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.9e-24 114.8 197 42.1
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.0e-23 114.4 203 39.9
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.0e-23 114.4 183 41.5
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.0e-23 114.4 209 39.2
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.8e-23 113.6 201 42.3
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 2.3e-23 113.2 201 38.8
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 2.3e-23 113.2 198 44.9
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 2.3e-23 113.2 195 37.4
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-23 112.8 194 37.6
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.0e-23 112.8 214 38.3
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 3.0e-23 112.8 204 40.2
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 3.9e-23 112.5 199 37.2
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 5.1e-23 112.1 213 38.5
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.5e-22 110.5 199 36.7
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 3.3e-22 109.4 199 36.2
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-22 109.4 199 36.2
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 3.3e-22 109.4 199 36.2
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.3e-22 109.4 195 38.5
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 3.3e-22 109.4 201 41.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.3e-22 109.0 221 37.6
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 5.7e-22 108.6 202 36.6
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 7.4e-22 108.2 197 37.1
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 9.7e-22 107.8 205 38.5
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-21 107.5 199 36.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.3e-21 107.5 217 38.2
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.2e-21 106.7 211 37.9
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 2.8e-21 106.3 196 41.3
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 3.7e-21 105.9 195 36.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 4.8e-21 105.5 202 37.1
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.3e-21 105.1 199 35.2
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.8e-20 103.6 197 43.1
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.1e-20 102.8 182 36.8
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.1e-20 102.8 175 41.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 3.1e-20 102.8 200 43.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 3.1e-20 102.8 204 37.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 4.1e-20 102.4 200 37.5
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.2e-19 100.9 190 38.4
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.5e-19 100.5 206 35.9
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.0e-19 100.1 242 34.3
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.5e-19 99.0 209 36.4
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 4.5e-19 99.0 223 32.3
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 7.7e-19 98.2 217 35.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 6.5e-18 95.1 206 35.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 8.5e-18 94.7 212 36.8
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 8.5e-18 94.7 217 35.9
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 8.5e-18 94.7 204 34.3
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 8.5e-18 94.7 205 33.7
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.2e-17 92.8 188 38.8
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 4.2e-17 92.4 192 34.9
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 4.2e-17 92.4 248 31.5
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 4.2e-17 92.4 199 33.2
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.2e-16 90.9 195 36.4
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.6e-16 90.5 196 38.8
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.1e-16 90.1 196 33.7
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.6e-16 89.4 201 32.3
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 4.6e-16 89.0 176 36.4
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 4.6e-16 89.0 194 34.5
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 4.6e-16 89.0 231 32.5
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 6.1e-16 88.6 215 36.3
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 7.9e-16 88.2 176 36.9
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-15 86.3 182 35.7
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-15 86.3 176 35.2
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 5.1e-15 85.5 201 34.3
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 8.8e-15 84.7 166 36.7
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-14 84.3 180 33.9
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-14 84.3 180 36.1
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.5e-14 84.0 193 33.2
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.5e-14 84.0 171 38.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.0e-14 83.6 185 36.2
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.0e-14 83.6 162 42.6
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 2.5e-14 83.2 193 35.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.5e-14 83.2 184 38.0
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.5e-14 83.2 95 51.6
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 5.7e-14 82.0 179 34.6
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 5.7e-14 82.0 179 34.6
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 5.7e-14 82.0 179 34.6
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 5.7e-14 82.0 223 32.3
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 9.7e-14 81.3 174 37.4
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 9.7e-14 81.3 174 37.4
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 9.7e-14 81.3 185 36.2
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.8e-13 79.0 197 34.0
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 8.2e-13 78.2 157 39.5
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.1e-12 76.3 83 55.4
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 6.9e-12 75.1 203 33.5
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-11 73.9 176 34.1
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.5e-11 73.9 176 34.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 2.0e-11 73.6 66 56.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 4.5e-11 72.4 158 36.1
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.9e-10 69.7 74 52.7
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 2.9e-10 69.7 75 53.3
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 3.8e-10 69.3 177 33.9
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.8e-10 69.3 102 39.2
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 5.0e-10 68.9 197 32.0
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-08 63.9 186 29.6
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 3.6e-08 62.8 205 28.8
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 4.7e-08 62.4 193 30.1
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 6.1e-08 62.0 188 32.4
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 1.1e-06 57.8 159 32.7
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.5e-06 57.4 183 26.2
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 7.4e-06 55.1 189 30.2
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 9.7e-06 54.7 191 27.7
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 9.7e-06 54.7 202 27.7


User provided reference genes

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