Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.3e-67 259.6 131 100.0
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 7.1e-58 227.3 126 88.9
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.6e-57 226.1 126 88.1
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.0e-56 221.9 131 89.3
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 8.6e-56 220.3 124 83.1
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.1e-55 219.9 125 84.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.5e-55 219.5 128 82.0
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.5e-55 218.8 126 84.1
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 3.3e-55 218.4 127 83.5
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 3.3e-55 218.4 127 83.5
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.3e-55 218.4 127 83.5
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 5.6e-55 217.6 125 83.2
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 5.6e-55 217.6 127 81.9
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 7.3e-55 217.2 126 82.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 7.3e-55 217.2 124 82.3
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 9.5e-55 216.9 131 79.4
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 2.1e-54 215.7 126 82.5
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.1e-54 215.7 127 81.9
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 2.1e-54 215.7 124 83.9
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.8e-54 215.3 128 80.5
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 2.8e-54 215.3 127 80.3
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.8e-54 215.3 125 83.2
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.7e-54 214.5 127 81.9
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.7e-54 214.5 127 81.9
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 8.1e-54 213.8 125 81.6
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.1e-53 213.4 127 80.3
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.4e-53 213.0 130 80.8
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 80.3
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 81.9
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.8e-53 212.6 125 80.8
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.3e-53 212.2 128 79.7
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.1e-53 211.8 127 79.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 3.1e-53 211.8 127 78.7
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 3.1e-53 211.8 127 78.7
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 5.2e-53 211.1 127 80.3
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 6.8e-53 210.7 125 80.8
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 6.8e-53 210.7 125 81.6
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 6.8e-53 210.7 127 81.1
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 6.8e-53 210.7 130 76.9
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 6.8e-53 210.7 130 76.9
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 8.9e-53 210.3 125 80.8
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 8.9e-53 210.3 125 80.8
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 8.9e-53 210.3 128 78.1
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.2e-52 209.9 125 80.8
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.2e-52 209.9 128 78.9
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.5e-52 209.5 125 81.6
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 2.6e-52 208.8 125 80.8
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 2.6e-52 208.8 126 79.4
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 3.4e-52 208.4 129 79.1
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.4e-52 208.4 131 78.6
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 5.8e-52 207.6 125 79.2
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 5.8e-52 207.6 125 80.0
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 7.6e-52 207.2 126 80.2
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 9.9e-52 206.8 129 79.8
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 128 75.8
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 131 77.9
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.3e-51 206.5 131 77.9
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 2.9e-51 205.3 125 77.6
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.9e-51 205.3 124 77.4
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 2.9e-51 205.3 125 79.2
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.9e-51 205.3 125 79.2
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.9e-51 205.3 125 79.2
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.9e-51 205.3 125 79.2
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 2.9e-51 205.3 128 78.1
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 3.7e-51 204.9 132 78.0
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 76.6
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.1e-50 203.4 128 77.3
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.4e-50 203.0 128 75.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 1.4e-50 203.0 125 77.6
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.9e-50 202.6 125 78.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.9e-50 202.6 126 78.6
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.9e-50 202.6 127 75.6
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 2.4e-50 202.2 131 75.6
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.2e-50 201.8 125 77.6
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.2e-50 201.8 127 75.6
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 4.1e-50 201.4 128 75.8
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 5.4e-50 201.1 131 74.8
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 5.4e-50 201.1 125 75.2
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.1e-50 200.7 125 77.6
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.2e-49 199.9 125 76.0
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 2.1e-49 199.1 130 73.8
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 2.7e-49 198.7 125 76.0
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 2.7e-49 198.7 130 73.1
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 4.6e-49 198.0 131 71.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 6.0e-49 197.6 125 74.4
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.0e-48 196.8 131 72.5
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.0e-48 196.8 131 72.5
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 75.6
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.3e-48 196.4 132 73.5
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.3e-48 196.4 131 72.5
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.3e-48 196.4 131 72.5
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 1.7e-48 196.1 131 72.5
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.7e-48 196.1 124 77.4
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 2.3e-48 195.7 131 72.5
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 3.0e-48 195.3 131 72.5
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 3.0e-48 195.3 131 72.5
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 3.0e-48 195.3 131 72.5
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 3.0e-48 195.3 125 73.6
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 3.9e-48 194.9 131 72.5
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 5.1e-48 194.5 131 72.5
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 6.6e-48 194.1 131 71.8
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 6.6e-48 194.1 125 73.6
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 8.6e-48 193.7 131 69.5
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.1e-47 193.4 125 74.4
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 1.5e-47 193.0 127 72.4
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.9e-47 192.6 130 71.5
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 7.3e-47 190.7 124 77.4
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.2e-46 189.9 129 71.3
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 4.7e-46 188.0 132 70.5
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 6.2e-46 187.6 111 79.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.6e-44 182.2 106 82.1
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.3e-43 179.9 168 57.1
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 9.3e-42 173.7 129 70.5
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 6.0e-41 171.0 96 84.4
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.4e-34 149.1 103 74.8
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 4.2e-34 148.3 82 84.1
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.7e-32 142.9 82 82.9
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 6.6e-32 141.0 91 76.9
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.7e-27 126.3 76 82.9
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 7.1e-26 120.9 82 72.0
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 3.0e-24 115.5 103 58.3
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 5.1e-24 114.8 88 61.4
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.6e-23 110.5 131 51.1
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 2.1e-22 109.4 89 62.9
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.9e-21 104.4 63 81.0
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.6e-20 100.9 71 73.2
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.9e-19 99.0 59 83.1
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.4e-19 97.4 71 73.2
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.4e-18 96.7 82 54.9
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 1.3e-14 83.6 49 81.6
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.8e-13 79.7 112 47.3
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 6.9e-13 77.8 97 44.3
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.5e-10 68.2 36 83.3
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 5.5e-10 68.2 59 49.2
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.5e-07 59.3 40 65.0
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.7e-06 55.5 54 59.3


User provided reference genes

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