Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 9.3e-242 839.7 404 100.0
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 4.6e-156 555.1 363 71.9
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 5.9e-156 554.7 361 71.5
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.8e-156 554.3 363 71.9
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.3e-155 552.7 363 71.9
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.9e-155 552.0 367 70.6
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.6e-155 551.2 363 71.6
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.1e-154 550.4 361 71.2
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.5e-154 550.1 372 70.7
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.3e-154 548.5 345 74.8
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 7.3e-154 547.7 363 71.6
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.6e-153 546.6 345 73.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.6e-153 545.4 358 71.8
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 8.0e-153 544.3 361 70.6
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 8.0e-153 544.3 380 69.5
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.4e-152 543.5 386 68.7
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 8.9e-152 540.8 366 71.3
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 9.8e-151 537.3 368 71.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.3e-150 537.0 342 74.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.9e-150 535.0 365 69.3
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 4.9e-150 535.0 387 66.7
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 6.4e-150 534.6 341 71.8
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.4e-150 534.6 358 72.1
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 8.3e-150 534.3 346 71.7
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.1e-149 533.9 389 66.1
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.1e-149 533.9 348 72.1
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.4e-149 533.5 364 69.8
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.1e-149 531.9 345 71.9
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 4.1e-149 531.9 359 69.1
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.0e-149 531.2 338 74.9
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 7.0e-149 531.2 360 69.2
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.2e-148 530.4 364 68.1
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.2e-148 530.4 365 67.4
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.6e-148 530.0 342 72.2
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.0e-148 529.6 344 72.1
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.0e-148 529.6 346 72.5
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.8e-148 527.7 365 69.6
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 7.8e-148 527.7 362 69.9
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.3e-147 526.9 368 68.5
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.3e-147 526.9 371 68.7
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.3e-147 526.9 342 72.2
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.7e-147 526.6 359 69.9
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.3e-147 526.2 357 68.6
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.3e-147 526.2 349 70.2
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.0e-147 525.8 362 69.1
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.0e-147 525.8 362 69.1
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 3.0e-147 525.8 392 66.6
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 3.0e-147 525.8 359 69.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.9e-147 525.4 361 69.0
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.5e-146 523.5 369 69.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.5e-146 522.7 361 67.0
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.3e-146 521.9 346 70.2
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 5.6e-146 521.5 368 67.9
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 7.3e-146 521.2 367 69.2
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.2e-145 520.4 344 72.1
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.2e-145 520.4 400 65.5
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 3.6e-145 518.8 367 68.9
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.4e-144 516.9 365 68.2
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.4e-144 516.9 365 68.2
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.4e-144 516.9 376 65.7
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.1e-144 515.8 371 67.7
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 2.0e-143 513.1 358 67.3
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.0e-143 513.1 358 67.3
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.6e-143 512.7 345 69.3
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.6e-143 512.7 387 66.9
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 4.4e-143 511.9 365 67.9
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 5.8e-143 511.5 365 67.7
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 1.3e-142 510.4 337 70.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.7e-142 510.0 344 69.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.9e-142 509.2 359 66.6
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.2e-141 505.8 363 67.2
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-140 503.8 357 67.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.1e-140 503.1 323 74.0
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.5e-140 502.3 352 68.2
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 3.5e-140 502.3 319 72.4
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.0e-139 499.2 343 69.4
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 3.9e-139 498.8 339 68.4
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 5.1e-139 498.4 359 66.3
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 6.6e-139 498.0 344 68.9
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 8.6e-139 497.7 362 66.9
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.9e-138 496.5 357 68.3
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 4.3e-138 495.4 346 66.8
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 4.3e-138 495.4 375 63.7
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.1e-137 493.0 386 61.1
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.8e-137 492.7 388 63.1
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 6.2e-137 491.5 373 63.5
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.1e-136 490.7 359 62.4
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.1e-136 489.2 309 73.5
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 3.1e-136 489.2 376 63.6
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 6.8e-136 488.0 319 71.2
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.5e-135 486.9 306 72.9
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.0e-135 486.5 347 67.1
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 4.4e-135 485.3 367 65.1
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 5.8e-135 485.0 333 68.8
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 9.9e-135 484.2 379 62.5
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.7e-134 483.4 367 64.9
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.9e-134 482.6 358 62.8
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.1e-133 480.7 343 67.1
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 4.1e-133 478.8 388 62.1
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 5.4e-133 478.4 253 91.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 5.4e-133 478.4 341 66.3
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.2e-132 477.2 344 67.2
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 2.7e-132 476.1 298 72.5
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.7e-132 476.1 352 65.6
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.7e-131 473.4 351 65.2
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.3e-131 473.0 345 62.6
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 6.6e-131 471.5 343 65.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.5e-130 470.3 364 63.7
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.9e-130 469.9 306 71.2
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.5e-130 469.5 377 61.3
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-129 467.2 368 61.7
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.1e-129 466.5 351 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 3.6e-129 465.7 333 65.5
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 8.1e-129 464.5 364 63.2
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.1e-128 464.2 363 61.2
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 9.9e-127 457.6 363 60.9
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 7.1e-125 451.4 351 63.0
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.7e-124 449.5 355 61.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 4.3e-122 442.2 341 62.2
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.6e-121 440.3 337 61.7
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.0e-120 435.6 302 66.2
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 4.9e-118 428.7 366 57.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.9e-117 426.8 319 62.4
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.2e-117 425.6 323 63.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.5e-111 407.1 362 58.6
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 9.9e-111 404.4 324 56.8
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.3e-110 404.1 231 76.2
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.9e-110 402.9 282 66.0
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.9e-107 392.5 338 56.5
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.1e-104 382.9 304 61.2
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 3.0e-99 366.3 314 58.6
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.8e-96 357.1 362 50.8
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 7.2e-93 345.1 203 76.8
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.1e-92 343.6 198 77.3
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.8e-88 330.5 198 76.8
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 3.8e-86 322.8 219 70.3
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.3e-83 313.5 177 80.8
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.0e-82 310.5 253 57.7
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 8.5e-78 295.0 231 63.2
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 5.5e-77 292.4 231 61.9
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.5e-74 284.3 390 40.0
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.8e-73 280.0 343 42.9
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-68 264.6 229 55.9
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 2.7e-68 263.5 302 44.0
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.8e-64 250.8 405 37.5
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 5.5e-61 239.2 221 52.5
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 3.7e-49 199.9 332 38.0
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.7e-46 191.0 182 53.3
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.5e-45 188.0 125 73.6
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-31 141.7 148 50.7
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-27 128.3 115 59.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.8e-27 127.9 108 56.5
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.1e-24 116.7 64 82.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 8.9e-19 99.0 56 78.6


User provided reference genes

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