Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2980 Ceratophyllum demersum HOM05D002826 ORTHO05D003105 9.7e-80 300.1 148 100.0
CDE05G2693 Ceratophyllum demersum HOM05D002826 ORTHO05D003105 2.6e-64 248.8 130 93.8
Nn1g01623 Nelumbo nucifera HOM05D002826 ORTHO05D003105 3.8e-44 181.8 156 62.2
TAR628G1706 Trochodendron aralioides HOM05D002826 ORTHO05D003105 2.5e-43 179.1 156 60.3
Solyc04g082020.3 Solanum lycopersicum HOM05D002826 ORTHO05D003105 1.6e-42 176.4 153 64.7
Sopen04g035670 Solanum pennellii HOM05D002826 ORTHO05D003105 2.8e-42 175.6 153 64.7
Nn6g31897 Nelumbo nucifera HOM05D002826 ORTHO05D003105 3.6e-42 175.3 156 61.5
GSVIVG01008732001 Vitis vinifera HOM05D002826 ORTHO05D003105 1.0e-41 173.7 141 63.8
Hma1.2p1_3012F.1_g331620 Hydrangea macrophylla HOM05D002826 ORTHO05D003105 2.3e-41 172.6 155 60.6
Peaxi162Scf00174g01015 Petunia axillaris HOM05D002826 ORTHO05D003105 5.2e-41 171.4 152 64.5
Manes.05G141900 Manihot esculenta HOM05D002826 ORTHO05D003105 6.8e-41 171.0 156 62.2
Eucgr.F03705 Eucalyptus grandis HOM05D002826 ORTHO05D003105 8.9e-41 170.6 137 64.2
PGSC0003DMG400009958 Solanum tuberosum HOM05D002826 ORTHO05D003105 8.9e-41 170.6 153 62.7
Dinv31898 Davidia involucrata HOM05D002826 ORTHO05D003105 1.5e-40 169.9 154 59.7
Dinv39561 Davidia involucrata HOM05D002826 ORTHO05D003105 1.5e-40 169.9 142 63.4
CSS0023064 Camellia sinensis var. sinensis HOM05D002826 ORTHO05D003105 5.7e-40 167.9 158 60.1
Duzib116G0507 Durio zibethinus HOM05D002826 ORTHO05D003105 5.7e-40 167.9 155 58.7
QL11p052502 Quercus lobata HOM05D002826 ORTHO05D003105 5.7e-40 167.9 149 60.4
TAR381G1567 Trochodendron aralioides HOM05D002826 ORTHO05D003105 5.7e-40 167.9 156 57.7
Nitab4.5_0003030g0020 Nicotiana tabacum HOM05D002826 ORTHO05D003105 7.5e-40 167.5 153 64.7
MD10G1129200 Malus domestica HOM05D002826 ORTHO05D003105 1.3e-39 166.8 147 60.5
CsaV3_7G001250 Cucumis sativus L. HOM05D002826 ORTHO05D003105 1.7e-39 166.4 145 60.0
Potri.005G246200 Populus trichocarpa HOM05D002826 ORTHO05D003105 1.7e-39 166.4 158 59.5
CSS0009204 Camellia sinensis var. sinensis HOM05D002826 ORTHO05D003105 2.2e-39 166.0 141 62.4
Cpa.g.sc26.255 Carica papaya HOM05D002826 ORTHO05D003105 2.2e-39 166.0 142 62.0
CiPaw.08G069700 Carya illinoinensis HOM05D002826 ORTHO05D003105 2.8e-39 165.6 154 59.1
TWI56G0331 Tripterygium wilfordii HOM05D002826 ORTHO05D003105 3.7e-39 165.2 154 58.4
Ciclev10002475m.g Citrus clementina HOM05D002826 ORTHO05D003105 4.9e-39 164.9 155 58.1
Thecc.08G052500 Theobroma cacao HOM05D002826 ORTHO05D003105 4.9e-39 164.9 147 60.5
MELO3C013330.2 Cucumis melo HOM05D002826 ORTHO05D003105 6.3e-39 164.5 145 59.3
Duzib093G1699 Durio zibethinus HOM05D002826 ORTHO05D003105 6.3e-39 164.5 142 62.0
Sabra05G0190300 Salix brachista HOM05D002826 ORTHO05D003105 6.3e-39 164.5 156 58.3
ClCG02G003880 Citrullus lanatus HOM05D002826 ORTHO05D003105 8.3e-39 164.1 131 66.4
THA.LOC104813220 Tarenaya hassleriana HOM05D002826 ORTHO05D003105 8.3e-39 164.1 141 60.3
Potri.002G015900 Populus trichocarpa HOM05D002826 ORTHO05D003105 1.1e-38 163.7 153 59.5
Sabra02G0012700 Salix brachista HOM05D002826 ORTHO05D003105 1.1e-38 163.7 152 60.5
Lj4A802T110 Lonicera japonica HOM05D002826 ORTHO05D003105 1.4e-38 163.3 159 57.9
Aqoxy6G01935 Aquilegia oxysepala HOM05D002826 ORTHO05D003105 1.8e-38 162.9 158 57.6
QL02p013021 Quercus lobata HOM05D002826 ORTHO05D003105 2.4e-38 162.5 148 62.2
SalBow6G2958 Salvia bowleyana HOM05D002826 ORTHO05D003105 2.4e-38 162.5 144 64.6
Rhsim06G0011300 Rhododendron simsii HOM05D002826 ORTHO05D003105 3.1e-38 162.2 151 59.6
COL.COLO4_26077 Corchorus olitorius HOM05D002826 ORTHO05D003105 5.4e-38 161.4 157 58.6
FvH4_2g15740 Fragaria vesca HOM05D002826 ORTHO05D003105 5.4e-38 161.4 154 57.8
HanXRQChr11g0322251 Helianthus annuus HOM05D002826 ORTHO05D003105 5.4e-38 161.4 155 59.4
Prupe.8G169800 Prunus persica HOM05D002826 ORTHO05D003105 5.4e-38 161.4 147 59.9
ECA232G0330 Erigeron canadensis HOM05D002826 ORTHO05D003105 7.0e-38 161.0 157 56.7
FAN15G0661 Fragaria x ananassa HOM05D002826 ORTHO05D003105 7.0e-38 161.0 157 57.3
Aa31LG9G12360 Aethionema arabicum HOM05D002826 ORTHO05D003105 9.2e-38 160.6 143 62.9
MBI08_g05716_MAGBIO Magnolia biondii HOM05D002826 ORTHO05D003105 1.6e-37 159.8 118 70.3
RcHm_v2.0_Chr6g0279051 Rosa chinensis HOM05D002826 ORTHO05D003105 1.6e-37 159.8 148 60.8
DCAR_013893 Daucus carota HOM05D002826 ORTHO05D003105 2.0e-37 159.5 122 68.0
FAN27G0593 Fragaria x ananassa HOM05D002826 ORTHO05D003105 2.0e-37 159.5 155 56.1
FAN24G2039 Fragaria x ananassa HOM05D002826 ORTHO05D003105 2.7e-37 159.1 154 57.8
Actinidia17021 Actinidia chinensis HOM05D002826 ORTHO05D003105 3.5e-37 158.7 158 57.0
Gohir.A01G108700 Gossypium hirsutum HOM05D002826 ORTHO05D003105 3.5e-37 158.7 118 68.6
PSO675G0007 Papaver somniferum HOM05D002826 ORTHO05D003105 3.5e-37 158.7 146 60.3
Haze_22718 Corylus avellana HOM05D002826 ORTHO05D003105 5.9e-37 157.9 154 55.2
PSO541G5721 Papaver somniferum HOM05D002826 ORTHO05D003105 5.9e-37 157.9 146 60.3
Ah.01g023310 Amaranthus hybridus HOM05D002826 ORTHO05D003105 1.0e-36 157.1 146 58.9
vmacro21847 Vaccinium macrocarpon HOM05D002826 ORTHO05D003105 1.0e-36 157.1 151 58.3
Gohir.D01G095300 Gossypium hirsutum HOM05D002826 ORTHO05D003105 1.7e-36 156.4 118 67.8
Gorai.002G120700 Gossypium raimondii HOM05D002826 ORTHO05D003105 1.7e-36 156.4 151 60.3
Zm00001eb272170 Zea mays HOM05D002826 ORTHO05D003105 1.7e-36 156.4 105 73.3
Medtr1g112990 Medicago truncatula HOM05D002826 ORTHO05D003105 2.3e-36 156.0 121 66.1
Sc18g0006230 Simmondsia chinensis HOM05D002826 ORTHO05D003105 2.3e-36 156.0 121 65.3
Zm00001eb228290 Zea mays HOM05D002826 ORTHO05D003105 2.3e-36 156.0 135 63.7
BcaC03g16466 Brassica carinata HOM05D002826 ORTHO05D003105 2.9e-36 155.6 141 61.0
C02p42780 Brassica napus HOM05D002826 ORTHO05D003105 2.9e-36 155.6 141 61.0
BolC2t10314H Brassica oleracea HOM05D002826 ORTHO05D003105 2.9e-36 155.6 141 61.0
CANSAT25G1892 Cannabis sativa HOM05D002826 ORTHO05D003105 2.9e-36 155.6 147 59.2
CANSAT25G2885 Cannabis sativa HOM05D002826 ORTHO05D003105 2.9e-36 155.6 147 59.2
Cc10_g01070 Coffea canephora HOM05D002826 ORTHO05D003105 2.9e-36 155.6 126 69.8
Migut.N03189 Erythranthe guttata HOM05D002826 ORTHO05D003105 2.9e-36 155.6 135 63.7
HPP92_014544 Vanilla planifolia HOM05D002236 ORTHO05D002341 2.9e-36 155.6 125 65.6
Sed0003034 Sechium edule HOM05D002826 ORTHO05D003105 5.0e-36 154.8 147 58.5
Os06g0724400 Oryza sativa ssp. japonica HOM05D002826 ORTHO05D003105 8.6e-36 154.1 111 71.2
Haze_02092 Corylus avellana HOM05D002826 ORTHO05D003105 1.9e-35 152.9 162 56.2
HanXRQChr06g0184841 Helianthus annuus HOM05D002826 ORTHO05D003105 1.9e-35 152.9 158 55.7
SGA_v2.0_scaffold275G46539 Striga asiatica HOM05D002826 ORTHO05D003105 2.5e-35 152.5 155 57.4
MD05G1126400 Malus domestica HOM05D002826 ORTHO05D003105 4.3e-35 151.8 133 61.7
SGA_v2.0_scaffold145G36105 Striga asiatica HOM05D002826 ORTHO05D003105 4.3e-35 151.8 155 57.4
AUR62010005 Chenopodium quinoa HOM05D002826 ORTHO05D003105 5.6e-35 151.4 121 62.0
Lsat_1_v5_gn_2_6900 Lactuca sativa HOM05D002826 ORTHO05D003105 5.6e-35 151.4 159 54.7
Lalb_Chr06g0163761 Lupinus albus HOM05D002826 ORTHO05D003105 5.6e-35 151.4 126 62.7
PGR142G1133 Punica granatum HOM05D002826 ORTHO05D003105 7.3e-35 151.0 136 58.8
unitig_744.g24605 Utricularia gibba HOM05D002826 ORTHO05D003105 7.3e-35 151.0 114 68.4
Lj5g0014599 Lotus japonicus HOM05D002826 ORTHO05D003105 1.2e-34 150.2 95 76.8
Glyma.10G283900 Glycine max HOM05D002826 ORTHO05D003105 2.1e-34 149.4 93 78.5
CiPaw.05G085900 Carya illinoinensis HOM05D002826 ORTHO05D003105 2.8e-34 149.1 172 50.6
Thhalv10027929m.g Eutrema salsugineum HOM05D002826 ORTHO05D003105 2.8e-34 149.1 143 59.4
CARHR185890 Cardamine hirsuta HOM05D002826 ORTHO05D003105 3.6e-34 148.7 145 60.0
Cfa005295 Carpinus fangiana HOM05D002826 ORTHO05D003105 3.6e-34 148.7 162 56.2
Sp7g08460 Schrenkiella parvula HOM05D002826 ORTHO05D003105 3.6e-34 148.7 141 59.6
AL6G39820 Arabidopsis lyrata HOM05D002826 ORTHO05D003105 4.7e-34 148.3 145 60.0
Eucgr.I01459 Eucalyptus grandis HOM05D002826 ORTHO05D003105 6.1e-34 147.9 119 62.2
Glyma.20G105800 Glycine max HOM05D002826 ORTHO05D003105 6.1e-34 147.9 147 58.5
SalBow7G0593 Salvia bowleyana HOM05D002826 ORTHO05D003105 6.1e-34 147.9 162 55.6
ATR0661G310 Amborella trichopoda HOM05D002826 ORTHO05D003105 8.0e-34 147.5 141 57.4
Ca_03293_v3 Cicer arietinum L. HOM05D002826 ORTHO05D003105 8.0e-34 147.5 167 53.3
Sed0001204 Sechium edule HOM05D002826 ORTHO05D003105 8.0e-34 147.5 121 64.5
EL10Ac9g21332 Beta vulgaris HOM05D002826 ORTHO05D003105 1.8e-33 146.4 134 56.0
FAN20G0297 Fragaria x ananassa HOM05D002236 ORTHO05D002341 1.8e-33 146.4 90 74.4
Oeu041361.1 Olea europaea HOM05D002826 ORTHO05D003105 1.8e-33 146.4 156 56.4
CAN.G311.81 Capsicum annuum HOM05D002826 ORTHO05D003105 3.0e-33 145.6 83 83.1
Carub.0006s2525 Capsella rubella HOM05D002826 ORTHO05D003105 5.2e-33 144.8 111 67.6
Hund06451 Selenicereus undatus HOM05D002826 ORTHO05D003105 6.8e-33 144.4 92 76.1
Phvul.007G017400 Phaseolus vulgaris HOM05D002826 ORTHO05D003105 8.9e-33 144.1 93 77.4
TPR.G2417 Trifolium pratense HOM05D002826 ORTHO05D003105 1.5e-32 143.3 96 71.9
VMungo0720G1494 Vigna mungo HOM05D002826 ORTHO05D003105 2.0e-32 142.9 122 63.1
AUR62012994 Chenopodium quinoa HOM05D002826 ORTHO05D003105 3.4e-32 142.1 155 51.6
AT5G27280 Arabidopsis thaliana HOM05D002826 ORTHO05D003105 4.4e-32 141.7 118 66.1
Atru.chr13.209 Acer truncatum HOM05D002826 ORTHO05D003105 1.7e-31 139.8 83 79.5
Psat3g175920 Pisum sativum HOM05D002826 ORTHO05D003105 6.4e-31 137.9 84 75.0
SEGI_27970 Sequoiadendron giganteum HOM05D002826 ORTHO05D003105 3.2e-30 135.6 92 72.8
Hma1.2p1_2322F.1_g319860 Hydrangea macrophylla HOM05D002826 ORTHO05D003105 3.0e-28 129.0 135 54.1
AagrBONN_evm.TU.Sc2ySwM_362.1913 Anthoceros agrestis HOM05D002826 ORTHO05D003105 1.5e-27 126.7 90 68.9
SMO170G0032 Selaginella moellendorffii HOM05D002826 ORTHO05D003105 4.7e-26 121.7 89 67.4
Mapoly0030s0011 Marchantia polymorpha HOM05D002826 ORTHO05D003105 5.8e-24 114.8 90 63.3
Pp3c5_3740 Physcomitrium patens HOM05D002826 ORTHO05D003105 9.8e-24 114.0 93 60.2
Lalb_Chr21g0306971 Lupinus albus HOM05D002826 ORTHO05D003105 1.8e-17 93.2 53 77.4
arahy.Tifrunner.gnm1.ann1.9X5JNZ Arachis hypogaea HOM05D002826 ORTHO05D003105 3.1e-17 92.4 77 64.9
arahy.Tifrunner.gnm1.ann1.DU76ZX Arachis hypogaea HOM05D002826 ORTHO05D003105 3.1e-17 92.4 77 64.9
CBR_g45372 Chara braunii HOM05D002826 ORTHO05D003105 2.4e-14 82.8 92 47.8
Zm00001eb240610 Zea mays HOM05D002826 ORTHO05D003105 2.4e-14 82.8 66 59.1
Migut.C00905 Erythranthe guttata HOM05D002826 ORTHO05D003105 1.6e-13 80.1 93 49.5
Psat6g234560 Pisum sativum HOM05D002826 ORTHO05D003105 9.5e-11 70.9 139 38.8
Zm00001eb342600 Zea mays HOM05D002826 ORTHO05D003105 1.7e-07 60.1 83 45.8
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 2.9e-07 59.3 31 87.1
CBR_g44611 Chara braunii HOM05D002826 ORTHO05D003105 4.9e-07 58.5 35 68.6
Carub.0002s1528 Capsella rubella HOM05D002826 ORTHO05D003105 8.4e-07 57.8 49 57.1
CiPaw.01G092300 Carya illinoinensis HOM05D002826 ORTHO05D003105 8.4e-07 57.8 67 49.3
Mapoly0005s0251 Marchantia polymorpha HOM05D002826 ORTHO05D003105 1.1e-06 57.4 70 48.6
AT1G68730 Arabidopsis thaliana HOM05D002826 ORTHO05D003105 4.2e-06 55.5 41 61.0
GSVIVG01012002001 Vitis vinifera HOM05D002826 ORTHO05D003105 4.2e-06 55.5 80 37.5
AagrBONN_evm.TU.Sc2ySwM_369.238 Anthoceros agrestis HOM05D002826 ORTHO05D003105 9.2e-06 54.3 76 43.4


User provided reference genes

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