Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 2.3e-38 161.8 84 100.0
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 4.9e-20 100.9 75 73.3
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 4.9e-20 100.9 67 73.1
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 6.4e-20 100.5 61 80.3
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 8.3e-20 100.1 61 80.3
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 8.3e-20 100.1 61 80.3
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.1e-19 99.8 78 67.9
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.1e-19 99.8 70 71.4
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.4e-19 99.4 61 78.7
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.4e-19 99.4 70 71.4
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.9e-19 99.0 75 69.3
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.9e-19 99.0 76 69.7
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 2.4e-19 98.6 61 78.7
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.2e-19 98.2 75 69.3
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.2e-19 98.2 61 77.0
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 5.4e-19 97.4 75 68.0
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 5.4e-19 97.4 75 68.0
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 5.4e-19 97.4 72 69.4
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 5.4e-19 97.4 72 72.2
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 7.1e-19 97.1 74 68.9
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 7.1e-19 97.1 67 71.6
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 9.2e-19 96.7 72 70.8
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 9.2e-19 96.7 61 73.8
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 1.2e-18 96.3 61 73.8
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.2e-18 96.3 60 78.3
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.6e-18 95.9 60 76.7
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 1.6e-18 95.9 58 79.3
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 1.6e-18 95.9 58 81.0
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.1e-18 95.5 61 75.4
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.1e-18 95.5 61 75.4
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.1e-18 95.5 58 79.3
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.1e-18 95.5 75 64.0
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.1e-18 95.5 60 76.7
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.7e-18 95.1 75 64.0
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 2.7e-18 95.1 60 78.3
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.7e-18 95.1 73 67.1
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 2.7e-18 95.1 58 77.6
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.5e-18 94.7 72 66.7
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 3.5e-18 94.7 71 67.6
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 3.5e-18 94.7 58 79.3
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 3.5e-18 94.7 58 79.3
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 4.6e-18 94.4 58 77.6
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 4.6e-18 94.4 58 77.6
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 4.6e-18 94.4 68 67.6
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 4.6e-18 94.4 66 68.2
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 4.6e-18 94.4 70 67.1
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 4.6e-18 94.4 65 70.8
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 6.0e-18 94.0 58 79.3
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 6.0e-18 94.0 60 78.3
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 6.0e-18 94.0 75 69.3
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 6.0e-18 94.0 59 74.6
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 6.0e-18 94.0 59 78.0
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.0e-18 94.0 59 78.0
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.0e-18 94.0 59 78.0
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 6.0e-18 94.0 58 79.3
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 6.0e-18 94.0 66 68.2
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 6.0e-18 94.0 74 62.2
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 7.8e-18 93.6 67 67.2
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 7.8e-18 93.6 58 77.6
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 7.8e-18 93.6 58 77.6
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 7.8e-18 93.6 58 77.6
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 7.8e-18 93.6 70 70.0
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 7.8e-18 93.6 74 64.9
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.0e-17 93.2 60 75.0
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.0e-17 93.2 61 70.5
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.0e-17 93.2 58 75.9
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 1.3e-17 92.8 59 76.3
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 1.3e-17 92.8 58 75.9
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.7e-17 92.4 61 75.4
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.7e-17 92.4 74 63.5
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.7e-17 92.4 58 74.1
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.7e-17 92.4 60 75.0
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.7e-17 92.4 58 75.9
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.3e-17 92.0 74 64.9
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 2.3e-17 92.0 61 68.9
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 2.3e-17 92.0 58 75.9
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 2.3e-17 92.0 59 78.0
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 2.3e-17 92.0 72 65.3
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.0e-17 91.7 65 67.7
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 3.0e-17 91.7 59 72.9
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 3.0e-17 91.7 66 68.2
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 5.1e-17 90.9 59 76.3
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 5.1e-17 90.9 58 74.1
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 6.6e-17 90.5 58 75.9
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 8.6e-17 90.1 58 74.1
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 8.6e-17 90.1 58 75.9
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 8.6e-17 90.1 58 75.9
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 8.6e-17 90.1 58 75.9
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 8.6e-17 90.1 58 75.9
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 8.6e-17 90.1 68 63.2
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 1.1e-16 89.7 66 65.2
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.1e-16 89.7 58 75.9
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.1e-16 89.7 58 75.9
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 1.1e-16 89.7 58 74.1
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.1e-16 89.7 58 74.1
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 1.5e-16 89.4 58 74.1
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 1.5e-16 89.4 58 72.4
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.9e-16 89.0 61 70.5
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.9e-16 89.0 55 76.4
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.9e-16 89.0 69 65.2
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 1.9e-16 89.0 66 65.2
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 1.9e-16 89.0 60 73.3
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 2.5e-16 88.6 58 74.1
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 2.5e-16 88.6 58 74.1
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 2.5e-16 88.6 60 68.3
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.5e-16 88.6 60 68.3
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 2.5e-16 88.6 59 72.9
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 3.3e-16 88.2 69 63.8
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.3e-16 88.2 69 63.8
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.3e-16 88.2 61 67.2
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 4.3e-16 87.8 58 74.1
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 4.3e-16 87.8 58 72.4
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 4.3e-16 87.8 58 72.4
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 5.6e-16 87.4 69 62.3
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 5.6e-16 87.4 61 67.2
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 7.3e-16 87.0 62 67.7
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 9.5e-16 86.7 63 66.7
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.5e-16 86.7 58 72.4
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 9.5e-16 86.7 55 74.5
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.2e-15 86.3 58 72.4
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 1.6e-15 85.9 58 75.9
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 1.6e-15 85.9 58 70.7
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.6e-15 85.9 58 70.7
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.6e-15 84.7 60 70.0
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 4.7e-15 84.3 60 66.7
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 6.2e-15 84.0 58 69.0
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 6.2e-15 84.0 58 69.0
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 6.2e-15 84.0 58 69.0
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 1.1e-14 83.2 55 72.7
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 1.1e-14 83.2 67 62.7
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.8e-14 82.4 56 71.4
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.4e-14 82.0 54 72.2
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.1e-14 81.6 66 60.6
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.1e-14 81.6 66 60.6
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 5.2e-14 80.9 62 67.7
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 3.4e-13 78.2 60 63.3
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 3.4e-13 78.2 64 62.5
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 4.4e-13 77.8 57 66.7
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 5.8e-13 77.4 58 63.8
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 3.8e-12 74.7 58 60.3
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 3.8e-12 74.7 49 71.4
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 4.9e-12 74.3 55 63.6
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 1.1e-11 73.2 58 60.3
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.4e-11 72.8 58 63.8
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.4e-11 72.8 42 81.0
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.9e-11 72.4 41 82.9
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.4e-11 72.0 56 62.5
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 7.1e-11 70.5 40 80.0
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 7.1e-11 70.5 59 61.0
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 7.1e-11 70.5 59 61.0
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 9.2e-11 70.1 58 58.6
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.2e-10 69.7 72 51.4
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 2.1e-10 68.9 58 56.9
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.3e-09 65.5 42 76.2
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 1.6e-07 59.3 62 46.8
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 1.8e-06 55.8 34 73.5


User provided reference genes

Program Settings