Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.1e-84 316.6 169 100.0
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.2e-44 183.7 221 54.3
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 9.8e-20 100.9 214 37.4
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.2e-17 94.0 122 45.9
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 5.1e-16 88.6 184 37.0
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 6.6e-16 88.2 184 36.4
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-15 87.4 186 37.1
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.1e-15 87.4 224 33.0
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.5e-15 87.0 202 33.7
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.5e-15 87.0 182 37.4
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 5.6e-15 85.1 221 33.0
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 9.5e-15 84.3 181 35.9
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.6e-14 83.6 188 35.6
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.6e-14 83.6 182 37.9
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.8e-14 82.8 188 35.6
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 2.8e-14 82.8 220 32.3
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 8.1e-14 81.3 195 34.9
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 8.1e-14 81.3 184 37.0
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.1e-14 81.3 203 34.5
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 8.1e-14 81.3 193 32.6
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 8.1e-14 81.3 203 35.0
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 8.1e-14 81.3 188 35.1
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 8.1e-14 81.3 183 35.5
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.1e-13 80.9 184 37.0
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.1e-13 80.9 188 34.0
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.1e-13 80.9 188 34.0
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.1e-13 80.9 244 32.4
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.4e-13 80.5 190 33.7
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.4e-13 80.5 195 34.9
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.4e-13 80.5 189 34.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.8e-13 80.1 208 35.6
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.3e-13 79.7 184 34.2
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.3e-13 79.7 213 33.8
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 2.3e-13 79.7 186 34.9
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.3e-13 79.7 193 32.1
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 3.1e-13 79.3 223 33.2
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 3.1e-13 79.3 159 39.6
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 4.0e-13 79.0 186 33.9
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 4.0e-13 79.0 194 35.1
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 5.2e-13 78.6 184 35.3
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 5.2e-13 78.6 194 36.6
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 6.8e-13 78.2 188 34.6
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.8e-13 78.2 194 34.5
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 6.8e-13 78.2 192 31.2
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 8.9e-13 77.8 203 33.0
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.2e-12 77.4 188 34.0
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.2e-12 77.4 229 29.7
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.2e-12 77.4 194 33.5
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.2e-12 77.4 227 30.8
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.5e-12 77.0 188 34.0
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 2.0e-12 76.6 186 34.9
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.6e-12 76.3 198 33.3
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.4e-12 75.9 188 36.7
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 4.4e-12 75.5 184 34.2
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 4.4e-12 75.5 183 36.1
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.4e-12 75.5 194 33.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 5.8e-12 75.1 188 34.6
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.8e-12 75.1 189 36.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.8e-12 75.1 189 36.0
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 5.8e-12 75.1 189 36.0
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 5.8e-12 75.1 186 34.4
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 5.8e-12 75.1 174 37.4
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 7.5e-12 74.7 208 30.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.5e-12 74.7 214 30.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 7.5e-12 74.7 179 35.8
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 9.9e-12 74.3 186 34.4
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 9.9e-12 74.3 184 34.2
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 9.9e-12 74.3 189 33.9
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 9.9e-12 74.3 189 33.9
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 9.9e-12 74.3 189 34.9
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 9.9e-12 74.3 186 34.9
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 9.9e-12 74.3 193 32.6
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 9.9e-12 74.3 233 30.0
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.3e-11 73.9 184 34.2
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.3e-11 73.9 230 31.3
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.3e-11 73.9 192 32.3
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.7e-11 73.6 185 34.1
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-11 73.6 184 34.2
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.7e-11 73.6 189 33.3
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.7e-11 73.6 187 35.3
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.2e-11 73.2 185 34.1
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 2.2e-11 73.2 189 33.9
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.2e-11 73.2 185 34.1
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 2.2e-11 73.2 186 33.3
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.9e-11 72.8 189 33.9
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 2.9e-11 72.8 183 32.8
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.9e-11 72.8 194 33.5
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.7e-11 72.4 184 33.2
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 3.7e-11 72.4 186 33.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.7e-11 72.4 213 31.9
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 3.7e-11 72.4 184 33.7
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 4.9e-11 72.0 184 34.2
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 6.4e-11 71.6 188 33.5
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.4e-11 71.6 184 32.6
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 6.4e-11 71.6 191 32.5
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.4e-11 71.6 185 32.4
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 6.4e-11 71.6 184 33.2
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 8.3e-11 71.2 52 59.6
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.1e-10 70.9 229 31.9
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.9e-10 70.1 197 33.5
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.9e-10 70.1 183 32.8
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.9e-10 70.1 212 31.1
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.9e-10 70.1 175 34.9
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.4e-10 69.7 50 62.0
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 3.2e-10 69.3 206 32.0
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.2e-10 69.3 56 55.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 4.1e-10 68.9 185 34.1
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 4.1e-10 68.9 185 34.1
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 4.1e-10 68.9 185 34.1
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 4.1e-10 68.9 52 57.7
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 5.4e-10 68.6 188 33.0
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 7.1e-10 68.2 52 59.6
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 7.1e-10 68.2 213 29.1
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 9.2e-10 67.8 52 57.7
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 9.2e-10 67.8 189 33.3
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 9.2e-10 67.8 86 38.4
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.2e-09 67.4 49 59.2
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.2e-09 67.4 218 31.2
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.6e-09 67.0 185 33.0
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.6e-09 67.0 191 33.5
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.6e-09 67.0 92 43.5
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.1e-09 66.6 52 55.8
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.1e-09 66.6 196 32.7
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.7e-09 66.2 190 30.0
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.7e-09 66.2 190 30.0
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 7.8e-09 64.7 52 55.8
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 7.8e-09 64.7 185 30.8
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.0e-08 64.3 185 30.8
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.0e-08 64.3 85 41.2
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.3e-08 63.9 184 31.5
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.7e-08 63.5 184 33.7
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 3.9e-08 62.4 94 40.4
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 3.9e-08 62.4 52 51.9
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 5.1e-08 62.0 185 28.1
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 5.1e-08 62.0 228 30.3
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 5.1e-08 62.0 181 33.7
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 6.6e-08 61.6 96 34.4
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.6e-08 61.6 54 55.6
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.5e-07 60.5 46 58.7
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 2.5e-07 59.7 51 51.0
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 4.3e-07 58.9 52 53.8
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.3e-07 58.9 52 48.1
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.6e-06 57.0 50 48.0
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 4.7e-06 55.5 53 45.3
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 4.7e-06 55.5 43 58.1


User provided reference genes

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