Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 1.6e-94 349.4 172 100.0
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 3.5e-65 251.9 201 67.2
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.6e-25 120.2 221 40.7
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 5.1e-24 115.2 200 43.0
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 7.4e-23 111.3 222 36.9
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 4.8e-22 108.6 218 37.6
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.1e-21 107.5 224 37.1
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 5.3e-21 105.1 207 35.3
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.2e-20 104.0 202 35.1
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 2.0e-20 103.2 215 35.8
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 2.6e-20 102.8 211 36.5
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 5.9e-20 101.7 227 33.9
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.9e-19 99.4 195 35.4
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 6.5e-19 98.2 220 36.4
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 1.9e-18 96.7 206 36.4
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 2.5e-18 96.3 219 34.2
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 5.5e-18 95.1 225 31.1
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 9.4e-18 94.4 216 34.3
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 9.4e-18 94.4 226 35.0
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 9.4e-18 94.4 218 35.3
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 1.2e-17 94.0 228 35.5
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.2e-17 94.0 201 34.3
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 1.0e-16 90.9 206 34.5
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.8e-16 90.1 235 32.3
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 1.8e-16 90.1 207 38.2
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 2.3e-16 89.7 218 35.3
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 3.9e-16 89.0 190 35.8
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 3.9e-16 89.0 204 34.8
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 3.9e-16 89.0 194 35.1
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 5.1e-16 88.6 192 37.5
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 5.1e-16 88.6 216 32.4
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 5.1e-16 88.6 216 31.9
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 6.7e-16 88.2 224 35.7
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 6.7e-16 88.2 218 33.9
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 8.8e-16 87.8 205 38.0
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 8.8e-16 87.8 199 32.7
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 1.1e-15 87.4 204 34.3
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 1.1e-15 87.4 190 35.3
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.0e-15 86.7 190 36.8
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 2.6e-15 86.3 199 35.2
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 2.6e-15 86.3 215 32.1
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 4.4e-15 85.5 186 34.4
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 4.4e-15 85.5 198 32.3
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 7.4e-15 84.7 200 32.5
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 9.7e-15 84.3 210 31.9
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 1.7e-14 83.6 197 33.0
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 2.8e-14 82.8 235 31.5
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.7e-14 82.4 218 34.4
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 4.8e-14 82.0 232 31.5
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 4.8e-14 82.0 219 32.0
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 6.3e-14 81.6 223 30.5
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 6.3e-14 81.6 199 34.7
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 6.3e-14 81.6 205 32.2
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.1e-13 80.9 233 33.5
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 1.1e-13 80.9 200 33.0
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 1.8e-13 80.1 227 29.5
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 3.1e-13 79.3 242 31.8
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 4.1e-13 79.0 197 31.0
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 5.3e-13 78.6 231 31.2
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 5.3e-13 78.6 193 32.1
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 9.1e-13 77.8 219 31.1
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 9.1e-13 77.8 181 35.9
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.2e-12 77.4 220 30.5
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.5e-12 77.0 221 30.3
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 1.5e-12 77.0 209 31.6
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 2.0e-12 76.6 244 30.7
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.0e-12 76.6 187 35.8
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 2.6e-12 76.3 219 31.1
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 2.6e-12 76.3 237 30.0
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.6e-12 76.3 242 29.8
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 4.5e-12 75.5 213 30.0
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 5.9e-12 75.1 212 29.7
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 7.7e-12 74.7 178 32.0
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 7.7e-12 74.7 197 32.0
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 7.7e-12 74.7 231 31.6
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 7.7e-12 74.7 213 30.5
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.0e-11 74.3 201 30.3
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 1.3e-11 73.9 216 31.9
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 1.7e-11 73.6 215 30.7
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 1.7e-11 73.6 187 34.8
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 2.2e-11 73.2 196 32.7
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 2.9e-11 72.8 217 30.4
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 2.9e-11 72.8 239 31.8
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 2.9e-11 72.8 194 30.4
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 3.8e-11 72.4 212 30.7
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 5.0e-11 72.0 251 32.3
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 5.0e-11 72.0 221 27.6
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 5.0e-11 72.0 202 31.7
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 5.0e-11 72.0 188 33.0
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 6.5e-11 71.6 224 29.5
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 1.1e-10 70.9 187 32.6
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 1.1e-10 70.9 241 29.0
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 1.9e-10 70.1 194 33.0
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.9e-10 70.1 216 31.0
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 2.5e-10 69.7 214 31.8
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 2.5e-10 69.7 234 29.1
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 2.5e-10 69.7 205 31.2
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 3.2e-10 69.3 220 30.0
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 3.2e-10 69.3 226 30.5
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 4.2e-10 68.9 215 31.6
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 4.2e-10 68.9 202 31.2
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 5.5e-10 68.6 242 30.2
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 5.5e-10 68.6 204 35.8
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 7.2e-10 68.2 229 30.1
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 7.2e-10 68.2 199 28.6
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 7.2e-10 68.2 232 32.3
HanXRQChr12g0366691 Helianthus annuus HOM05D003173 ORTHO05D003546 7.2e-10 68.2 170 30.6
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 7.2e-10 68.2 194 34.0
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 9.4e-10 67.8 239 30.5
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 1.2e-09 67.4 240 31.2
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.1e-09 66.6 244 31.6
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 2.1e-09 66.6 243 30.5
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 2.1e-09 66.6 244 31.6
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 2.1e-09 66.6 199 28.1
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 2.1e-09 66.6 233 28.3
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 2.1e-09 66.6 205 34.6
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 2.7e-09 66.2 216 29.6
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 2.7e-09 66.2 241 32.4
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 2.7e-09 66.2 251 29.1
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 4.7e-09 65.5 202 27.7
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 6.1e-09 65.1 222 30.6
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 6.1e-09 65.1 183 30.1
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 8.0e-09 64.7 217 30.0
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 8.0e-09 64.7 217 28.6
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 8.0e-09 64.7 233 32.2
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 1.0e-08 64.3 221 26.2
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 1.0e-08 64.3 221 26.2
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 1.0e-08 64.3 221 27.6
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.4e-08 63.9 266 26.7
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.8e-08 63.5 211 29.9
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 1.8e-08 63.5 125 38.4
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.8e-08 63.5 232 31.5
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 1.8e-08 63.5 208 28.4
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 1.8e-08 63.5 220 30.5
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.3e-08 63.2 226 27.4
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 2.3e-08 63.2 232 31.9
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 3.0e-08 62.8 186 29.6
Potri.005G107500 Populus trichocarpa HOM05D003173 ORTHO05D003546 6.7e-08 61.6 194 28.9
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 8.8e-08 61.2 205 28.3
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.1e-07 60.8 214 28.0
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 1.5e-07 60.5 85 44.7
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 2.6e-07 59.7 202 28.7
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 4.4e-07 58.9 234 26.9
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 5.7e-07 58.5 187 32.1
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 5.7e-07 58.5 225 27.1
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 7.4e-07 58.2 255 28.6
Manes.02G110500 Manihot esculenta HOM05D003173 ORTHO05D003546 7.4e-07 58.2 54 51.9
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.3e-06 57.4 214 28.5
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 1.3e-06 57.4 171 32.7
MBI17_g07971_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 2.2e-06 56.6 106 37.7
CiPaw.07G063500 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.8e-06 56.2 59 42.4
Phvul.002G104300 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.8e-06 56.2 86 38.4
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 4.8e-06 55.5 194 25.8
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 4.8e-06 55.5 116 35.3
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 6.3e-06 55.1 261 27.2
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 8.2e-06 54.7 192 30.2


User provided reference genes

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