Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 2.4e-107 392.1 190 100.0
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 4.2e-59 231.9 177 61.0
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 3.5e-58 228.8 185 59.5
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.3e-57 226.9 176 60.2
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.3e-57 226.9 168 61.3
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.7e-57 226.5 185 54.6
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 2.3e-57 226.1 179 60.3
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 3.9e-57 225.3 189 56.1
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 3.9e-57 225.3 174 60.3
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 5.1e-57 224.9 167 62.9
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 6.6e-57 224.6 151 66.2
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 8.7e-57 224.2 189 55.6
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.1e-56 223.8 176 59.7
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 1.5e-56 223.4 177 59.3
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.5e-56 223.4 191 57.1
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 1.9e-56 223.0 181 57.5
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 2.5e-56 222.6 163 62.0
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 2.5e-56 222.6 190 53.7
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 3.3e-56 222.2 154 64.3
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 4.3e-56 221.9 152 62.5
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 5.6e-56 221.5 153 61.4
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 3.6e-55 218.8 174 60.3
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 4.8e-55 218.4 152 64.5
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 1.1e-54 217.2 181 58.0
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.4e-54 216.9 152 64.5
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.4e-54 216.9 179 55.3
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 1.8e-54 216.5 153 62.7
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 2.4e-54 216.1 153 61.4
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 2.4e-54 216.1 150 64.7
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.1e-54 215.7 152 63.2
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 4.0e-54 215.3 169 60.9
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 4.0e-54 215.3 173 57.2
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 6.9e-54 214.5 164 58.5
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.9e-54 214.5 182 53.8
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 9.0e-54 214.2 153 62.7
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 9.0e-54 214.2 181 58.0
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 1.2e-53 213.8 184 56.0
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 1.2e-53 213.8 152 62.5
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 1.2e-53 213.8 184 56.0
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 2.6e-53 212.6 168 58.9
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 3.4e-53 212.2 153 62.1
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 5.8e-53 211.5 153 60.8
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 7.6e-53 211.1 181 54.1
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 9.9e-53 210.7 180 55.6
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 1.3e-52 210.3 154 63.0
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.7e-52 209.9 186 56.5
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 1.7e-52 209.9 177 57.1
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 1.7e-52 209.9 177 57.1
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 2.2e-52 209.5 177 57.6
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.2e-52 209.5 152 60.5
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 2.9e-52 209.1 164 56.7
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 3.8e-52 208.8 177 55.9
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.8e-52 208.8 152 60.5
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 3.8e-52 208.8 188 52.7
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 4.9e-52 208.4 177 53.7
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 6.4e-52 208.0 153 61.4
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 8.4e-52 207.6 169 59.8
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 8.4e-52 207.6 164 56.7
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 1.9e-51 206.5 177 55.9
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 1.9e-51 206.5 156 60.9
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 3.2e-51 205.7 153 61.4
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 3.2e-51 205.7 153 59.5
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 4.2e-51 205.3 171 53.2
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 7.1e-51 204.5 152 61.8
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 7.1e-51 204.5 150 58.0
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 9.3e-51 204.1 176 54.5
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 9.3e-51 204.1 153 61.4
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 9.3e-51 204.1 153 60.1
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.2e-50 203.8 159 56.6
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 1.2e-50 203.8 180 56.1
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.2e-50 203.8 150 57.3
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.2e-50 203.8 150 58.7
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 1.6e-50 203.4 153 57.5
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 2.7e-50 202.6 175 51.4
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 2.7e-50 202.6 191 51.3
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 3.5e-50 202.2 152 55.3
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 3.5e-50 202.2 148 62.2
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 4.6e-50 201.8 153 57.5
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 4.6e-50 201.8 182 52.7
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 4.6e-50 201.8 216 46.8
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 6.0e-50 201.4 146 60.3
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 1.0e-49 200.7 150 64.0
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 1.3e-49 200.3 177 55.4
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.3e-49 200.3 151 59.6
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.7e-49 199.9 153 61.4
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 2.3e-49 199.5 153 61.4
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 2.3e-49 199.5 152 60.5
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 2.3e-49 199.5 188 53.2
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 3.0e-49 199.1 152 61.8
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 3.0e-49 199.1 152 57.9
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 3.0e-49 199.1 152 57.9
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.9e-49 198.7 152 60.5
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 5.1e-49 198.4 152 59.9
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 5.1e-49 198.4 152 59.9
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 5.1e-49 198.4 170 55.3
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 5.1e-49 198.4 175 51.4
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 6.6e-49 198.0 171 55.6
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 1.1e-48 197.2 152 59.2
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.9e-48 196.4 152 56.6
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 5.6e-48 194.9 152 60.5
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 7.3e-48 194.5 176 56.8
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 1.3e-47 193.7 155 54.2
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 1.6e-47 193.4 180 55.0
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 1.4e-46 190.3 172 50.0
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 2.4e-43 179.5 150 52.0
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 6.0e-42 174.9 176 47.7
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.5e-40 170.2 161 46.6
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 1.1e-38 164.1 153 47.7
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.2e-37 160.6 173 42.2
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 4.5e-37 158.7 121 62.0
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 3.8e-36 155.6 157 44.6
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.4e-35 153.7 178 46.1
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.5e-34 149.1 185 40.0
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.5e-34 149.1 185 40.0
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 1.8e-33 146.7 111 63.1
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 3.0e-33 146.0 114 61.4
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.9e-33 145.6 148 43.2
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 9.6e-32 141.0 109 58.7
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 6.3e-31 138.3 101 61.4
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 2.4e-30 136.3 83 68.7
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.3e-30 135.2 89 65.2
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 6.5e-28 128.3 115 53.9
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.9e-24 116.7 150 36.7
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 5.5e-19 98.6 75 54.7
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.1e-17 92.0 74 55.4
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.1e-17 92.0 106 42.5
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 2.0e-16 90.1 66 56.1
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 2.5e-16 89.7 147 31.3
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 5.7e-16 88.6 67 56.7
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 7.4e-16 88.2 68 54.4
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.4e-14 83.2 144 28.5
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 2.0e-13 80.1 68 52.9
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.5e-11 73.2 143 23.8
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 3.2e-11 72.8 72 50.0
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 7.2e-11 71.6 45 64.4
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 2.2e-07 60.1 33 69.7


User provided reference genes

Program Settings