Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 4.4e-169 597.8 288 100.0
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 6.4e-144 514.2 276 89.5
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 7.8e-118 427.6 290 69.7
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 3.3e-116 422.2 288 68.4
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 4.4e-113 411.8 291 64.9
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.7e-112 409.8 290 66.6
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 1.7e-112 409.8 289 66.8
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.2e-112 409.5 290 66.6
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 4.9e-112 408.3 289 66.4
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 1.1e-111 407.1 291 68.0
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 1.1e-111 407.1 291 68.0
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.9e-111 406.4 290 66.2
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 2.4e-111 406.0 290 65.9
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.2e-111 405.6 288 66.3
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 4.2e-111 405.2 292 65.1
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 5.4e-111 404.8 288 64.9
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 9.3e-111 404.1 288 66.7
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 2.1e-110 402.9 294 63.9
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 2.1e-110 402.9 288 66.0
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 2.7e-110 402.5 289 67.1
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 2.7e-110 402.5 290 66.9
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 3.5e-110 402.1 289 64.7
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 7.8e-110 401.0 290 65.2
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.7e-109 399.8 288 65.6
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 2.3e-109 399.4 288 65.6
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 3.0e-109 399.1 292 65.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 5.1e-109 398.3 289 66.8
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 5.1e-109 398.3 290 64.1
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 6.6e-109 397.9 292 65.4
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 6.6e-109 397.9 290 64.1
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.1e-108 397.1 288 64.9
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 1.1e-108 397.1 288 64.9
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.1e-108 397.1 288 64.2
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.3e-108 395.6 287 66.9
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.3e-108 395.6 287 66.9
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 1.3e-107 393.7 290 64.8
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.3e-107 393.7 292 64.4
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.3e-107 393.7 289 63.7
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 1.3e-107 393.7 290 65.9
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 4.8e-107 391.7 290 64.5
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.1e-106 390.6 289 64.7
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.4e-106 390.2 290 64.1
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.4e-106 390.2 288 64.9
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-106 389.8 290 64.1
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 2.4e-106 389.4 291 64.6
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 2.4e-106 389.4 291 64.6
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 9.0e-106 387.5 290 64.8
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.2e-105 387.1 291 64.6
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.2e-105 387.1 291 64.6
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.2e-105 387.1 290 63.4
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 2.0e-105 386.3 289 61.6
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.0e-105 386.3 290 63.8
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 2.0e-105 386.3 288 64.9
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 2.0e-105 386.3 288 64.9
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 2.6e-105 386.0 288 64.2
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 5.8e-105 384.8 289 62.3
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 7.6e-105 384.4 290 63.8
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 7.6e-105 384.4 290 63.8
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 7.6e-105 384.4 290 63.8
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 2.2e-104 382.9 290 63.8
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 8.4e-104 380.9 286 64.0
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.1e-103 380.6 290 64.8
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.9e-103 379.8 283 63.3
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 2.4e-103 379.4 289 64.0
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 4.2e-103 378.6 289 60.6
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 9.3e-103 377.5 284 64.4
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 9.3e-103 377.5 286 62.6
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 3.5e-102 375.6 285 64.2
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 6.0e-102 374.8 268 68.3
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 1.3e-101 373.6 283 63.6
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 3.0e-101 372.5 333 56.5
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 8.7e-101 370.9 288 62.8
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.5e-100 370.2 287 62.7
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 9.6e-100 367.5 322 56.8
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 2.1e-99 366.3 247 69.6
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.8e-99 365.9 289 60.9
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 4.8e-99 365.2 270 64.1
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 4.8e-99 365.2 283 62.9
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.8e-98 363.2 294 61.6
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 5.3e-98 361.7 284 63.0
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 6.9e-98 361.3 247 68.8
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.5e-97 360.1 245 69.4
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 3.4e-97 359.0 352 52.6
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 4.5e-97 358.6 325 55.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 5.8e-97 358.2 317 56.2
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.1e-95 354.0 318 55.0
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 7.1e-95 351.3 401 45.9
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 6.0e-94 348.2 288 57.6
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.8e-93 346.7 263 62.7
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.6e-91 340.1 394 46.4
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 8.4e-88 327.8 275 58.5
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.2e-86 323.9 290 54.8
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.1e-86 323.2 290 54.5
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 2.1e-86 323.2 288 56.2
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.6e-86 322.0 287 55.4
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 6.0e-86 321.6 247 63.2
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 3.9e-85 318.9 285 56.1
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 2.9e-80 302.8 288 51.7
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.0e-77 294.3 196 70.9
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.6e-75 287.0 199 68.8
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.1e-74 284.3 217 62.7
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 3.1e-74 282.7 315 47.0
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 3.4e-73 279.3 271 52.8
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 2.9e-72 276.2 323 47.4
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.9e-71 273.5 238 56.7
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 1.8e-69 266.9 197 62.4
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.3e-67 260.8 197 62.4
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 4.5e-65 252.3 279 47.3
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 2.3e-61 240.0 264 45.5
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 2.6e-60 236.5 143 72.0
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.3e-56 224.2 268 44.0
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.0e-52 210.3 261 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 4.4e-52 209.1 208 50.5
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 7.2e-47 191.8 205 49.8
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.3e-35 154.5 111 66.7
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.3e-35 154.5 111 66.7
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 3.6e-30 136.3 105 60.0
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 4.1e-26 122.9 85 64.7
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 7.8e-25 118.6 81 63.0
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 5.0e-24 115.9 91 61.5
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 6.6e-24 115.5 95 61.1
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 4.3e-23 112.8 95 58.9
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 3.6e-22 109.8 93 54.8
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 6.2e-22 109.0 99 56.6
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 1.0e-21 108.2 95 58.9
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 3.1e-21 106.7 66 74.2
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 6.8e-21 105.5 57 82.5
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 8.9e-21 105.1 110 46.4
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 3.4e-20 103.2 61 70.5
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 4.4e-20 102.8 94 57.4
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 4.4e-20 102.8 75 66.7
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 1.9e-18 97.4 92 54.3
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.9e-18 97.4 51 74.5
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.2e-17 94.7 52 76.9
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.8e-13 80.9 77 54.5
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.0e-12 77.4 38 78.9
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.6e-12 77.0 60 63.3
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 6.4e-11 72.4 35 80.0
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.3e-08 64.7 64 53.1
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 8.6e-08 62.0 53 47.2
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 2.1e-06 57.4 33 60.6
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 2.1e-06 57.4 33 60.6


User provided reference genes

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