Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 0.0e+00 2426.0 1233 100.0
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1110.5 1167 52.5
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1106.3 1161 51.9
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1104.4 1169 52.4
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1094.7 1165 51.2
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1079.3 1167 51.7
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 8.4e-312 1074.3 1180 50.4
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 2.4e-309 1065.8 1149 51.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 9.2e-309 1063.9 1159 50.3
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 4.4e-303 1045.0 1126 51.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 2.2e-302 1042.7 1178 50.3
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 5.4e-301 1038.1 1156 48.4
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.6e-300 1035.0 1141 50.4
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 2.3e-299 1032.7 1152 49.3
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 6.6e-299 1031.2 1157 48.6
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.1e-298 1030.4 1156 48.2
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.1e-298 1030.4 1157 48.2
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 3.3e-298 1028.9 1161 49.7
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 7.3e-298 1027.7 1156 48.1
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 1.2e-297 1026.9 1156 48.1
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 2.4e-296 1022.7 1208 47.7
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.2e-292 1010.4 1203 47.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 3.5e-292 1008.8 1161 49.0
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 6.0e-292 1008.1 1167 48.2
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 6.0e-292 1008.1 1172 47.9
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.3e-289 1000.3 1157 48.5
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.1e-288 997.3 1150 50.1
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 1.4e-285 986.9 1228 46.1
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.9e-285 986.5 1158 48.2
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 2.4e-285 986.1 1162 49.3
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 4.6e-284 981.9 1152 47.3
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 3.0e-283 979.2 1198 46.9
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 8.7e-283 977.6 1177 48.3
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 9.6e-282 974.2 1169 48.2
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 6.9e-280 968.0 1188 47.0
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.5e-279 965.3 1150 46.9
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.7e-278 963.4 1163 48.2
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 1.1e-277 960.7 1156 46.8
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 3.2e-277 959.1 1165 47.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 1.6e-276 956.8 1191 46.5
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 2.1e-276 956.4 1147 48.4
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 3.5e-276 955.7 1165 46.7
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 6.7e-275 951.4 1178 45.8
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 1.5e-274 950.3 1151 47.3
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 6.2e-273 944.9 1163 45.9
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.1e-272 944.1 1211 46.0
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 2.4e-272 943.0 1141 46.3
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 6.9e-272 941.4 1157 47.1
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 2.0e-271 939.9 1135 46.3
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 2.6e-271 939.5 1149 45.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 3.4e-271 939.1 1145 45.5
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 5.8e-271 938.3 1144 44.8
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 5.8e-271 938.3 1193 46.4
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 4.9e-270 935.3 1187 44.9
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.4e-269 933.7 1161 45.8
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 5.5e-269 931.8 1150 45.0
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 1.8e-267 926.8 1152 46.6
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.5e-266 923.7 1135 45.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 1.9e-266 923.3 1156 46.3
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 2.5e-266 922.9 1167 46.1
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 9.6e-266 921.0 1164 45.2
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 1.8e-264 916.8 1142 46.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 4.1e-264 915.6 1150 45.6
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 5.3e-264 915.2 1147 45.0
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 9.0e-264 914.4 1136 45.4
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.2e-263 914.1 1137 45.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 2.9e-262 909.4 1138 45.3
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 1.9e-261 906.7 1158 45.8
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 2.7e-260 902.9 1038 48.3
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 3.9e-259 899.0 1136 44.8
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 3.9e-259 899.0 1142 45.3
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 8.2e-257 891.3 1319 41.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 4.1e-256 889.0 1170 45.1
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 4.6e-252 875.5 1260 42.4
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 2.0e-250 870.2 1167 44.8
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.1e-245 854.4 1154 43.8
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 9.4e-245 851.3 1010 48.7
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 4.2e-237 825.9 1387 39.0
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.8e-235 820.5 964 47.4
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 1.5e-229 800.8 935 49.0
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 1.9e-229 800.4 1166 42.0
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.2e-227 792.3 810 53.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 4.5e-223 779.2 1013 44.8
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.4e-202 709.9 924 44.4
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 2.0e-194 684.1 846 44.9
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 4.1e-184 649.8 796 46.6
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 3.0e-166 590.5 1145 33.9
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 3.3e-157 560.5 1212 31.6
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 1.2e-154 552.0 1205 31.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.6e-148 531.6 637 46.0
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 4.8e-148 530.0 566 50.4
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 2.9e-145 520.8 550 50.0
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 5.3e-131 473.4 1145 32.2
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 6.9e-131 473.0 600 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.8e-129 467.2 969 33.8
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 4.1e-115 420.6 506 46.0
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.2e-114 419.1 499 46.3
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.1e-107 396.0 543 41.6
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-101 375.6 470 44.0
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.5e-80 305.1 447 43.8
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.8e-78 298.9 327 50.5
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.6e-71 274.6 442 39.6
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-70 273.1 734 30.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 6.8e-70 270.4 571 33.8
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.4e-67 261.9 353 43.6
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.3e-64 251.1 258 53.1
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.9e-62 243.8 351 41.0
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.7e-60 239.2 264 50.4
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.1e-55 222.2 162 67.3
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.1e-54 219.9 355 41.7
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 2.7e-50 205.3 247 44.9
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.3e-49 202.2 138 69.6
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.7e-47 194.9 229 47.2
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.5e-45 189.5 1005 24.7
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.9e-43 182.6 186 54.3
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.3e-39 169.9 258 39.1
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 2.8e-39 168.7 146 56.8
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 2.8e-39 168.7 405 32.3
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 5.8e-37 161.0 143 55.9
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 7.6e-37 160.6 562 25.8
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 7.1e-35 154.1 216 42.6
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.0e-33 148.7 152 50.0
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.1e-32 146.7 173 49.7
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 2.4e-30 139.0 1041 22.8
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.2e-29 136.7 411 30.2
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 6.1e-26 124.4 200 40.5
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 9.7e-24 117.1 136 45.6
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.2e-20 105.9 77 63.6
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 3.8e-20 105.1 165 38.8
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.4e-19 103.2 100 49.0
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 2.1e-18 99.4 98 49.0
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.7e-18 99.0 148 39.9
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 2.3e-17 95.9 152 36.8
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 8.8e-17 94.0 87 52.9
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.2e-15 89.4 112 46.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 4.8e-15 88.2 172 34.9
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 9.1e-14 84.0 78 52.6
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.5e-13 83.2 84 51.2
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.0e-13 82.8 243 29.2
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.4e-13 82.0 77 49.4
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 5.9e-13 81.3 71 56.3
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 1.9e-11 76.3 97 46.4
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 1.8e-09 69.7 99 41.4
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 3.0e-09 68.9 99 40.4
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 3.9e-09 68.6 76 44.7
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 1.3e-07 63.5 66 54.5
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.8e-07 62.4 133 35.3
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 3.7e-07 62.0 66 48.5
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 8.2e-07 60.8 108 41.7
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 4.1e-06 58.5 106 35.8


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