Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 6.7e-174 614.0 327 100.0
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 2.8e-95 352.8 333 60.1
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.2e-90 337.4 328 56.1
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 4.6e-90 335.5 339 57.8
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 3.6e-87 325.9 353 52.1
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 6.2e-87 325.1 336 56.0
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.4e-86 323.9 337 55.2
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 2.4e-86 323.2 342 55.8
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 2.6e-85 319.7 343 54.8
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 4.4e-85 318.9 336 54.5
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.1e-83 314.3 343 53.6
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.4e-83 313.9 346 51.4
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 4.2e-83 312.4 355 51.0
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 4.2e-83 312.4 338 53.3
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 7.1e-83 311.6 343 52.8
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.2e-82 310.8 344 53.8
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 1.6e-82 310.5 345 52.8
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.7e-82 309.7 342 53.8
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.7e-82 309.7 345 52.2
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 3.5e-82 309.3 356 51.4
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 3.5e-82 309.3 354 52.8
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 6.0e-82 308.5 337 52.2
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 6.0e-82 308.5 336 52.4
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.3e-81 307.4 339 53.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.7e-81 307.0 335 53.7
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 8.7e-81 304.7 341 54.5
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 8.7e-81 304.7 349 53.0
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.1e-80 304.3 334 54.2
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.9e-80 303.5 338 52.7
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.9e-80 303.5 346 52.9
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 2.5e-80 303.1 348 52.3
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.5e-80 303.1 349 51.9
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.3e-80 302.8 353 51.3
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 7.3e-80 301.6 337 54.3
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 9.6e-80 301.2 340 53.2
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 9.6e-80 301.2 340 52.1
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 9.6e-80 301.2 338 52.1
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.6e-79 300.4 336 52.1
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.1e-79 300.1 329 52.9
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.1e-79 300.1 346 52.3
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.8e-79 299.7 361 51.2
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 4.8e-79 298.9 329 52.6
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 8.1e-79 298.1 349 51.9
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.4e-78 297.4 351 50.4
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.4e-78 296.6 329 52.0
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 3.1e-78 296.2 336 51.5
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 3.1e-78 296.2 349 51.9
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 4.0e-78 295.8 343 52.2
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 6.9e-78 295.0 343 51.3
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 6.9e-78 295.0 337 51.9
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 9.0e-78 294.7 342 51.5
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 9.0e-78 294.7 355 49.3
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 9.0e-78 294.7 349 51.6
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 1.2e-77 294.3 341 51.3
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.5e-77 293.9 352 49.4
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 2.6e-77 293.1 344 52.3
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.6e-77 293.1 355 50.1
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.4e-77 292.7 352 49.4
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 7.6e-77 291.6 346 49.7
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-76 290.8 352 48.9
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.7e-76 290.4 343 51.9
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.2e-76 290.0 349 50.7
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 3.8e-76 289.3 351 49.9
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.4e-76 288.1 352 48.3
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 8.4e-76 288.1 343 49.9
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.4e-75 287.3 339 51.9
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.9e-75 287.0 341 51.0
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 3.2e-75 286.2 334 49.7
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 4.2e-75 285.8 349 48.1
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 7.1e-75 285.0 342 49.1
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.2e-74 284.3 341 51.0
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.2e-74 284.3 341 50.4
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 2.1e-74 283.5 344 49.7
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 2.1e-74 283.5 339 49.9
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 3.5e-74 282.7 344 51.7
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.0e-73 281.2 342 48.5
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.3e-73 280.0 363 48.2
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.0e-73 279.6 352 47.7
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 8.7e-73 278.1 342 47.7
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 3.3e-72 276.2 348 50.6
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.6e-71 273.9 360 45.3
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.6e-71 273.9 342 48.0
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 3.7e-71 272.7 347 47.0
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 4.8e-71 272.3 335 47.5
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 6.2e-71 271.9 326 51.2
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 2.4e-70 270.0 356 45.5
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 2.4e-70 270.0 345 47.0
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 3.1e-70 269.6 250 57.6
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 3.1e-70 269.6 351 46.4
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 6.9e-70 268.5 345 46.7
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 6.9e-70 268.5 345 46.7
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 9.0e-70 268.1 348 48.3
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 2.6e-69 266.5 345 46.4
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 7.6e-69 265.0 348 45.4
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 1.3e-68 264.2 357 45.4
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 6.5e-68 261.9 356 44.7
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 8.4e-68 261.5 370 46.5
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.5e-67 260.0 229 61.1
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-66 257.7 354 46.0
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.1e-66 256.9 356 43.5
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 2.1e-66 256.9 344 45.1
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.7e-66 256.5 365 44.1
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 3.0e-65 253.1 317 48.3
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 3.0e-65 253.1 338 45.6
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.9e-64 250.4 356 45.5
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 5.7e-64 248.8 356 45.2
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 3.1e-62 243.0 366 43.7
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.3e-62 242.3 248 54.8
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.2e-61 241.1 370 43.5
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.9e-59 233.8 246 55.7
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 1.6e-58 230.7 338 42.9
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.8e-57 227.3 281 48.4
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.8e-57 227.3 343 42.6
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 3.7e-55 219.5 339 41.0
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 6.3e-55 218.8 339 42.5
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 8.5e-52 208.4 343 39.1
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-50 204.5 356 41.3
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.9e-49 199.5 211 53.6
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 1.5e-48 197.6 332 44.0
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 2.4e-46 190.3 169 58.6
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.7e-40 169.1 161 56.5
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-37 160.6 312 36.9
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.5e-37 159.8 147 59.2
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.1e-32 144.8 357 35.6
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 6.3e-31 139.0 201 42.3
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 7.0e-30 135.6 321 36.1
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 9.1e-30 135.2 355 33.5
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 7.5e-24 115.5 347 34.3
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.8e-23 113.6 96 57.3
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 6.3e-23 112.5 103 60.2
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 7.0e-22 109.0 103 58.3
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-20 105.1 103 57.3
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 8.3e-15 85.5 172 36.0
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 7.0e-14 82.4 295 30.2
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-13 81.6 107 48.6
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 8.6e-12 75.5 181 36.5
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 2.5e-11 73.9 82 51.2


User provided reference genes

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