Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2502 Ceratophyllum demersum HOM05D000638 ORTHO05D024736 4.5e-59 231.1 120 100.0
Nn1g05330 Nelumbo nucifera HOM05D000638 ORTHO05D002641 3.6e-16 88.6 81 49.4
Phvul.009G030200 Phaseolus vulgaris HOM05D000638 ORTHO05D002641 3.6e-16 88.6 81 51.9
Aqoxy6G00814 Aquilegia oxysepala HOM05D000638 ORTHO05D002641 4.7e-16 88.2 83 50.6
Potri.005G165700 Populus trichocarpa HOM05D000638 ORTHO05D002641 8.0e-16 87.4 83 49.4
AUR62027744 Chenopodium quinoa HOM05D000638 ORTHO05D002641 1.0e-15 87.0 81 45.7
Ah.05g170090 Amaranthus hybridus HOM05D000638 ORTHO05D002641 1.4e-15 86.7 81 45.7
TAR381G1557 Trochodendron aralioides HOM05D000638 ORTHO05D002641 1.8e-15 86.3 81 49.4
VMungo1309G1777 Vigna mungo HOM05D000638 ORTHO05D002641 1.8e-15 86.3 81 49.4
Glyma.04G103100 Glycine max HOM05D000638 ORTHO05D002641 3.0e-15 85.5 81 50.6
PSO210G0450 Papaver somniferum HOM05D000638 ORTHO05D002641 3.0e-15 85.5 82 51.2
PSO447G0278 Papaver somniferum HOM05D000638 ORTHO05D002641 3.0e-15 85.5 82 51.2
Aqoxy6G00813 Aquilegia oxysepala HOM05D000638 ORTHO05D002641 5.2e-15 84.7 83 50.6
EL10Ac1g01233 Beta vulgaris HOM05D000638 ORTHO05D002641 5.2e-15 84.7 79 44.3
DCAR_008724 Daucus carota HOM05D000638 ORTHO05D002641 5.2e-15 84.7 81 51.9
GSVIVG01009017001 Vitis vinifera HOM05D000638 ORTHO05D002641 6.8e-15 84.3 83 50.6
CiPaw.07G180900 Carya illinoinensis HOM05D000638 ORTHO05D002641 8.8e-15 84.0 81 50.6
BraA07t31858Z Brassica rapa HOM05D000638 ORTHO05D002641 1.2e-14 83.6 81 49.4
CANSAT25G1971 Cannabis sativa HOM05D000638 ORTHO05D002641 1.2e-14 83.6 81 50.6
Sabra02G0075100 Salix brachista HOM05D000638 ORTHO05D002641 1.5e-14 83.2 94 46.8
A07p43440 Brassica napus HOM05D000638 ORTHO05D002641 2.0e-14 82.8 81 48.1
COL.COLO4_16420 Corchorus olitorius HOM05D000638 ORTHO05D002641 2.0e-14 82.8 81 49.4
Lj1g0014212 Lotus japonicus HOM05D000638 ORTHO05D002641 2.0e-14 82.8 81 48.1
Peaxi162Scf00160g00629 Petunia axillaris HOM05D000638 ORTHO05D002641 2.0e-14 82.8 81 49.4
SGA_v2.0_scaffold28G11923 Striga asiatica HOM05D000638 ORTHO05D002641 2.0e-14 82.8 81 48.1
Haze_22254 Corylus avellana HOM05D000638 ORTHO05D002641 2.6e-14 82.4 81 48.1
Sc26g0000060 Simmondsia chinensis HOM05D000638 ORTHO05D002641 2.6e-14 82.4 82 48.8
Thecc.08G108500 Theobroma cacao HOM05D000638 ORTHO05D002641 2.6e-14 82.4 81 49.4
HanXRQChr05g0147391 Helianthus annuus HOM05D000638 ORTHO05D002641 3.4e-14 82.0 81 46.9
Sabra05G0125100 Salix brachista HOM05D000638 ORTHO05D002641 3.4e-14 82.0 81 49.4
BcaC08g47389 Brassica carinata HOM05D000638 ORTHO05D002641 4.4e-14 81.6 81 48.1
C06p52100 Brassica napus HOM05D000638 ORTHO05D002641 4.4e-14 81.6 81 48.1
BolC6t40233H Brassica oleracea HOM05D000638 ORTHO05D002641 4.4e-14 81.6 81 48.1
Thhalv10018789m.g Eutrema salsugineum HOM05D000638 ORTHO05D002641 4.4e-14 81.6 81 51.9
HanXRQChr15g0491871 Helianthus annuus HOM05D000638 ORTHO05D002641 4.4e-14 81.6 81 48.1
Peaxi162Scf00160g00511 Petunia axillaris HOM05D000638 ORTHO05D002641 4.4e-14 81.6 81 48.1
Prupe.1G514900 Prunus persica HOM05D000638 ORTHO05D002641 5.7e-14 81.3 81 49.4
AT1G78140 Arabidopsis thaliana HOM05D000638 ORTHO05D002641 7.5e-14 80.9 81 51.9
Duzib093G1839 Durio zibethinus HOM05D000638 ORTHO05D002641 7.5e-14 80.9 81 48.1
MD08G1181500 Malus domestica HOM05D000638 ORTHO05D002641 7.5e-14 80.9 81 51.9
arahy.Tifrunner.gnm1.ann1.NH3SHZ Arachis hypogaea HOM05D000638 ORTHO05D002641 9.8e-14 80.5 86 44.2
Duzib093G1154 Durio zibethinus HOM05D000638 ORTHO05D002641 9.8e-14 80.5 81 46.9
ECA232G4306 Erigeron canadensis HOM05D000638 ORTHO05D002641 9.8e-14 80.5 81 46.9
Medtr3g074250 Medicago truncatula HOM05D000638 ORTHO05D002641 9.8e-14 80.5 81 45.7
SalBow6G1940 Salvia bowleyana HOM05D000638 ORTHO05D002641 1.3e-13 80.1 81 46.9
SalBow6G4762 Salvia bowleyana HOM05D000638 ORTHO05D002641 1.3e-13 80.1 81 46.9
THA.LOC104809711 Tarenaya hassleriana HOM05D000638 ORTHO05D002641 1.3e-13 80.1 81 50.6
Aa31LG4G8190 Aethionema arabicum HOM05D000638 ORTHO05D002641 1.7e-13 79.7 81 53.1
arahy.Tifrunner.gnm1.ann1.2E6MRG Arachis hypogaea HOM05D000638 ORTHO05D002641 1.7e-13 79.7 81 45.7
BraA02t07207Z Brassica rapa HOM05D000638 ORTHO05D002641 1.7e-13 79.7 81 50.6
Duzib041G0281 Durio zibethinus HOM05D000638 ORTHO05D002641 1.7e-13 79.7 80 48.8
CSS0028372 Camellia sinensis var. sinensis HOM05D000638 ORTHO05D024736 2.2e-13 79.3 81 48.1
CSS0030262 Camellia sinensis var. sinensis HOM05D000638 ORTHO05D002641 2.2e-13 79.3 81 48.1
Cpa.g.sc36.123 Carica papaya HOM05D000638 ORTHO05D002641 2.2e-13 79.3 82 45.1
BcaC03g15797 Brassica carinata HOM05D000638 ORTHO05D002641 2.8e-13 79.0 81 49.4
A02p22040 Brassica napus HOM05D000638 ORTHO05D002641 2.8e-13 79.0 81 49.4
C02p35430 Brassica napus HOM05D000638 ORTHO05D002641 2.8e-13 79.0 81 49.4
BolC2t09556H Brassica oleracea HOM05D000638 ORTHO05D002641 2.8e-13 79.0 81 49.4
Manes.18G068300 Manihot esculenta HOM05D000638 ORTHO05D002641 2.8e-13 79.0 81 48.1
Hund26957 Selenicereus undatus HOM05D000638 ORTHO05D002641 2.8e-13 79.0 81 43.2
AL2G38450 Arabidopsis lyrata HOM05D000638 ORTHO05D002641 3.7e-13 78.6 81 49.4
MSTRG.24464 Avicennia marina HOM05D000638 ORTHO05D002641 4.8e-13 78.2 81 44.4
Cfa013626 Carpinus fangiana HOM05D000638 ORTHO05D002641 4.8e-13 78.2 81 48.1
BcaB05g25121 Brassica carinata HOM05D000638 ORTHO05D002641 6.3e-13 77.8 81 48.1
Ca_15245_v3 Cicer arietinum L. HOM05D000638 ORTHO05D002641 6.3e-13 77.8 81 45.7
ECA232G4891 Erigeron canadensis HOM05D000638 ORTHO05D002641 6.3e-13 77.8 81 49.4
PGR042G1858 Punica granatum HOM05D000638 ORTHO05D002641 6.3e-13 77.8 83 45.8
Gohir.A05G267400 Gossypium hirsutum HOM05D000638 ORTHO05D002641 8.3e-13 77.4 80 47.5
Gohir.D05G269100 Gossypium hirsutum HOM05D000638 ORTHO05D002641 8.3e-13 77.4 80 47.5
Gorai.009G281700 Gossypium raimondii HOM05D000638 ORTHO05D002641 8.3e-13 77.4 80 47.5
Lalb_Chr08g0242001 Lupinus albus HOM05D000638 ORTHO05D002641 8.3e-13 77.4 81 45.7
MBI05_g15588_MAGBIO Magnolia biondii HOM05D000638 ORTHO05D002641 8.3e-13 77.4 81 45.7
Migut.N02903 Erythranthe guttata HOM05D000638 ORTHO05D002641 1.1e-12 77.0 81 46.9
TPR.G22765 Trifolium pratense HOM05D000638 ORTHO05D002641 1.1e-12 77.0 81 45.7
unitig_578.g16202 Utricularia gibba HOM05D000638 ORTHO05D002641 1.1e-12 77.0 81 44.4
Lsat_1_v5_gn_9_41341 Lactuca sativa HOM05D000638 ORTHO05D002641 1.4e-12 76.6 83 44.6
HPP92_004292 Vanilla planifolia HOM05D000638 ORTHO05D002641 1.4e-12 76.6 81 45.7
CARHR071600 Cardamine hirsuta HOM05D000638 ORTHO05D002641 1.8e-12 76.3 81 49.4
Hund26956 Selenicereus undatus HOM05D000638 ORTHO05D002641 1.8e-12 76.3 81 38.3
Atru.chr13.1208 Acer truncatum HOM05D000638 ORTHO05D002641 2.4e-12 75.9 81 48.1
Ciclev10001682m.g Citrus clementina HOM05D000638 ORTHO05D002641 2.4e-12 75.9 81 43.2
Potri.002G095100 Populus trichocarpa HOM05D000638 ORTHO05D002641 2.4e-12 75.9 81 46.9
QL12p036539 Quercus lobata HOM05D000638 ORTHO05D002641 2.4e-12 75.9 81 46.9
Atru.chr13.1207 Acer truncatum HOM05D000638 ORTHO05D002641 4.1e-12 75.1 81 46.9
QL12p036546 Quercus lobata HOM05D000638 ORTHO05D002641 4.1e-12 75.1 81 45.7
SGA_v2.0_scaffold236G43726 Striga asiatica HOM05D000638 ORTHO05D024736 4.1e-12 75.1 90 45.6
Eucgr.F02436 Eucalyptus grandis HOM05D000638 ORTHO05D002641 9.1e-12 73.9 81 45.7
CSS0016742 Camellia sinensis var. sinensis HOM05D000638 ORTHO05D002641 1.2e-11 73.6 81 43.2
Lalb_Chr23g0270611 Lupinus albus HOM05D000638 ORTHO05D002641 1.2e-11 73.6 81 45.7
SGA_v2.0_scaffold222G42763 Striga asiatica HOM05D000638 ORTHO05D024736 1.2e-11 73.6 92 44.6
ClCG11G015300 Citrullus lanatus HOM05D000638 ORTHO05D002641 2.0e-11 72.8 80 42.5
Eucgr.F00306 Eucalyptus grandis HOM05D000638 ORTHO05D002641 2.7e-11 72.4 81 45.7
MD08G1181700 Malus domestica HOM05D000638 ORTHO05D002641 2.7e-11 72.4 81 48.1
MELO3C003448.2 Cucumis melo HOM05D000638 ORTHO05D002641 3.5e-11 72.0 80 40.0
Cc10_g07330 Coffea canephora HOM05D000638 ORTHO05D002641 4.5e-11 71.6 83 44.6
CsaV3_3G048720 Cucumis sativus L. HOM05D000638 ORTHO05D002641 4.5e-11 71.6 80 40.0
vmacro21282 Vaccinium macrocarpon HOM05D000638 ORTHO05D002641 5.9e-11 71.2 82 47.6
Eucgr.F00926 Eucalyptus grandis HOM05D000638 ORTHO05D002641 1.7e-10 69.7 81 44.4
MD15G1366900 Malus domestica HOM05D000638 ORTHO05D002641 1.7e-10 69.7 81 44.4
Os08g0411200 Oryza sativa ssp. japonica HOM05D000638 ORTHO05D002641 1.7e-10 69.7 80 42.5
FAN04G0615 Fragaria x ananassa HOM05D000638 ORTHO05D002641 2.9e-10 68.9 81 45.7
RcHm_v2.0_Chr7g0239331 Rosa chinensis HOM05D000638 ORTHO05D002641 2.9e-10 68.9 81 44.4
Gorai.002G140100 Gossypium raimondii HOM05D000638 ORTHO05D002641 8.6e-10 67.4 78 43.6
FAN08G1038 Fragaria x ananassa HOM05D000638 ORTHO05D024736 1.1e-09 67.0 84 42.9
FAN08G3575 Fragaria x ananassa HOM05D000638 ORTHO05D002641 1.1e-09 67.0 84 42.9
FvH4_5g37670 Fragaria vesca HOM05D000638 ORTHO05D002641 1.5e-09 66.6 81 43.2
MBI15_g14878_MAGBIO Magnolia biondii HOM05D000638 ORTHO05D002641 1.9e-09 66.2 83 42.2
Eucgr.F00305 Eucalyptus grandis HOM05D000638 ORTHO05D002641 3.3e-09 65.5 81 42.0
FAN13G2648 Fragaria x ananassa HOM05D000638 ORTHO05D002641 3.3e-09 65.5 81 42.0
PSO210G1073 Papaver somniferum HOM05D000638 ORTHO05D002641 4.2e-09 65.1 83 43.4
CBR_g147 Chara braunii HOM05D000638 ORTHO05D002641 7.2e-09 64.3 84 40.5
FAN18G3091 Fragaria x ananassa HOM05D000638 ORTHO05D002641 1.2e-08 63.5 81 42.0
PSO210G5386 Papaver somniferum HOM05D000638 ORTHO05D002641 1.2e-08 63.5 83 42.2
unitig_744.g24094 Utricularia gibba HOM05D000638 ORTHO05D002641 1.2e-08 63.5 81 42.0
BcaB03g15982 Brassica carinata HOM05D000638 ORTHO05D002641 3.6e-08 62.0 81 42.0
Cpa.g.sc46.75 Carica papaya HOM05D000638 ORTHO05D002641 4.7e-08 61.6 81 39.5
SEGI_19619 Sequoiadendron giganteum HOM05D000638 ORTHO05D002641 4.7e-08 61.6 84 39.3
Rhsim03G0254900 Rhododendron simsii HOM05D000638 ORTHO05D002641 1.4e-07 60.1 83 47.0
Sed0004495 Sechium edule HOM05D000638 ORTHO05D002641 1.8e-07 59.7 80 37.5
Actinidia38694 Actinidia chinensis HOM05D000638 ORTHO05D002641 3.0e-07 58.9 81 42.0
Lj7A449T41 Lonicera japonica HOM05D000638 ORTHO05D002641 3.0e-07 58.9 81 39.5
Lalb_Chr13g0301281 Lupinus albus HOM05D000638 ORTHO05D002641 3.0e-07 58.9 81 40.7
Os06g0646000 Oryza sativa ssp. japonica HOM05D000638 ORTHO05D002641 3.0e-07 58.9 83 38.6
Aqoxy7G02461 Aquilegia oxysepala HOM05D000638 ORTHO05D002641 4.0e-07 58.5 81 39.5
Mapoly0015s0204 Marchantia polymorpha HOM05D000638 ORTHO05D002641 4.0e-07 58.5 82 39.0
HanXRQChr12g0380271 Helianthus annuus HOM05D000638 ORTHO05D002641 5.2e-07 58.2 81 40.7
SMO304G0089 Selaginella moellendorffii HOM05D000638 ORTHO05D002641 6.8e-07 57.8 80 40.0
vmacro06104 Vaccinium macrocarpon HOM05D000638 ORTHO05D002641 6.8e-07 57.8 82 39.0
Dinv41436 Davidia involucrata HOM05D000638 ORTHO05D002641 8.9e-07 57.4 81 38.3
Dinv42924 Davidia involucrata HOM05D000638 ORTHO05D002641 8.9e-07 57.4 82 45.1
GSVIVG01012871001 Vitis vinifera HOM05D000638 ORTHO05D002641 8.9e-07 57.4 82 42.7
PGSC0003DMG401030729 Solanum tuberosum HOM05D000638 ORTHO05D002641 1.2e-06 57.0 80 40.0
Zm00001eb275150 Zea mays HOM05D000638 ORTHO05D002641 1.2e-06 57.0 83 37.3
HanXRQChr03g0063581 Helianthus annuus HOM05D000638 ORTHO05D002641 2.0e-06 56.2 82 39.0
Migut.K00389 Erythranthe guttata HOM05D000638 ORTHO05D002641 2.6e-06 55.8 81 34.6
FAN23G2978 Fragaria x ananassa HOM05D001077 ORTHO05D001053 2.6e-06 55.8 81 40.7
Lsat_1_v5_gn_7_46160 Lactuca sativa HOM05D000638 ORTHO05D002641 2.6e-06 55.8 82 39.0
SMO119G0244 Selaginella moellendorffii HOM05D000638 ORTHO05D002641 3.4e-06 55.5 82 35.4
Sed0023193 Sechium edule HOM05D000638 ORTHO05D002641 4.4e-06 55.1 80 38.8
Sopen07g003370 Solanum pennellii HOM05D000638 ORTHO05D002641 4.4e-06 55.1 80 37.5
CAN.G863.5 Capsicum annuum HOM05D000638 ORTHO05D002641 7.5e-06 54.3 80 36.2
FAN28G2272 Fragaria x ananassa HOM05D000638 ORTHO05D002641 9.8e-06 53.9 81 39.5
Nitab4.5_0016122g0010 Nicotiana tabacum HOM05D000638 ORTHO05D002641 9.8e-06 53.9 81 37.0
Solyc07g007310.3 Solanum lycopersicum HOM05D000638 ORTHO05D002641 9.8e-06 53.9 80 37.5
GSVIVG01012870001 Vitis vinifera HOM05D000638 ORTHO05D002641 9.8e-06 53.9 81 40.7


User provided reference genes

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