Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.9e-97 357.1 176 100.0
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.7e-94 349.4 176 96.6
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 4.0e-80 301.6 175 83.4
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 2.2e-78 295.8 181 81.8
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 81.2
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 81.2
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.1e-77 292.0 181 81.2
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 3.1e-77 292.0 180 81.1
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 4.1e-77 291.6 177 82.5
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.1e-77 291.6 179 80.4
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 4.1e-77 291.6 181 80.7
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 7.0e-77 290.8 181 80.1
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.0e-77 290.8 180 80.6
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.0e-77 290.8 180 80.6
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.1e-77 290.4 181 80.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.2e-76 290.0 178 81.5
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 2.0e-76 289.3 181 80.1
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 4.5e-76 288.1 178 80.3
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 4.5e-76 288.1 178 82.0
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 4.5e-76 288.1 181 80.1
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 7.7e-76 287.3 181 79.0
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.0e-75 287.0 179 82.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.0e-75 287.0 177 81.4
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 1.0e-75 287.0 179 81.0
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 1.0e-75 287.0 179 81.0
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 1.3e-75 286.6 181 80.1
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.3e-75 286.6 178 79.8
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 1.3e-75 286.6 177 80.2
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.7e-75 286.2 178 79.2
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.2e-75 285.8 180 78.9
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 2.9e-75 285.4 181 78.5
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 3.8e-75 285.0 177 79.7
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.8e-75 285.0 181 80.7
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 5.0e-75 284.6 181 79.0
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 5.0e-75 284.6 181 78.5
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 5.0e-75 284.6 177 80.2
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 5.0e-75 284.6 177 80.2
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 6.5e-75 284.3 181 79.0
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 6.5e-75 284.3 177 80.8
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 8.5e-75 283.9 178 79.8
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 8.5e-75 283.9 178 79.8
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 8.5e-75 283.9 181 77.9
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 8.5e-75 283.9 178 79.2
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.1e-74 283.5 178 80.3
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.9e-74 282.7 177 79.7
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.9e-74 282.7 177 79.7
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.5e-74 282.3 180 79.4
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.2e-74 282.0 178 79.8
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 7.2e-74 280.8 181 78.5
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 7.2e-74 280.8 202 71.8
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 9.4e-74 280.4 178 79.2
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.2e-73 280.0 182 77.5
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.1e-73 279.3 178 78.7
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.1e-73 279.3 178 78.1
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.6e-73 278.5 175 78.3
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.6e-73 278.5 178 77.5
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 4.7e-73 278.1 182 75.3
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 6.1e-73 277.7 165 83.6
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-72 276.9 177 78.0
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.4e-72 276.6 181 77.3
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.8e-72 276.2 174 78.7
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 4.0e-72 275.0 178 75.3
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 5.2e-72 274.6 180 75.0
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 6.8e-72 274.2 168 82.7
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.2e-71 273.5 178 74.7
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.2e-71 273.5 180 77.8
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.5e-71 273.1 181 77.9
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 3.4e-71 271.9 175 77.7
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 3.4e-71 271.9 167 82.6
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.7e-71 271.2 169 79.9
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 5.7e-71 271.2 176 76.7
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 7.5e-71 270.8 176 76.7
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.8e-71 270.4 167 80.2
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 9.8e-71 270.4 175 73.1
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 9.8e-71 270.4 174 74.7
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.3e-70 270.0 166 80.1
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.7e-70 269.6 181 74.6
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.7e-70 269.6 179 74.3
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 2.2e-70 269.2 167 79.6
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 2.2e-70 269.2 174 77.0
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.2e-70 269.2 167 80.8
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 3.7e-70 268.5 181 73.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 6.3e-70 267.7 166 79.5
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 8.3e-70 267.3 176 75.6
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 8.3e-70 267.3 178 75.3
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 8.3e-70 267.3 178 75.3
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.4e-69 266.5 181 72.9
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.4e-69 266.5 181 72.9
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.4e-69 266.5 179 74.9
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.8e-69 266.2 181 71.8
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.8e-69 266.2 179 74.9
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.4e-69 265.8 181 72.9
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.4e-69 265.8 181 73.5
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 2.4e-69 265.8 181 74.0
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 3.1e-69 265.4 176 75.0
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 4.1e-69 265.0 178 74.2
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 9.1e-69 263.8 181 72.4
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 9.1e-69 263.8 181 72.9
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.2e-68 263.5 179 73.2
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.6e-68 263.1 174 75.3
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.6e-68 263.1 181 72.9
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.0e-68 262.7 181 72.4
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 2.7e-68 262.3 181 71.8
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.7e-68 262.3 177 73.4
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.7e-68 262.3 169 76.9
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-68 261.9 181 71.3
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.5e-68 261.5 181 72.4
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 4.5e-68 261.5 181 71.8
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 5.9e-68 261.2 175 76.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.7e-68 260.8 167 77.8
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 7.7e-68 260.8 168 77.4
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.3e-67 259.2 182 71.4
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 2.9e-67 258.8 180 74.4
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 5.0e-67 258.1 173 73.4
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-66 256.9 182 70.9
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.9e-66 256.1 182 70.9
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-66 256.1 182 70.9
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.9e-66 256.1 182 70.9
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.9e-66 256.1 200 68.5
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 3.2e-66 255.4 182 70.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 7.2e-66 254.2 168 76.2
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.2e-65 253.4 178 71.3
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.6e-65 253.1 157 80.3
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.1e-65 252.7 168 75.6
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 5.2e-64 248.1 176 68.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.3e-62 243.4 172 69.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 8.3e-62 240.7 168 72.0
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.4e-61 240.0 169 71.6
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 3.1e-61 238.8 173 67.6
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.6e-60 236.5 174 66.7
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.7e-59 233.0 258 52.3
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 7.3e-58 227.6 149 77.2
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 6.8e-56 221.1 146 76.0
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 8.9e-56 220.7 175 67.4
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.8e-48 196.4 168 56.5
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.7e-46 189.9 147 66.7
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 2.7e-44 182.6 169 58.0
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.7e-36 156.0 113 69.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.6e-33 146.7 130 63.8
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.6e-33 146.7 80 88.8
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 3.6e-33 145.6 165 44.2
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.8e-32 143.3 99 75.8
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 2.7e-28 129.4 176 38.6
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.3e-27 126.3 69 85.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 8.4e-22 107.8 100 58.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.3e-21 104.4 57 82.5
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.1e-20 103.2 57 86.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 3.0e-19 99.4 51 92.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 6.6e-19 98.2 89 60.7
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 1.1e-16 90.9 165 32.7
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.8e-16 90.1 75 62.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.8e-16 90.1 75 62.7
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 9.0e-16 87.8 164 32.3
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.4e-13 80.5 90 50.0
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.0e-11 72.8 37 91.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 3.9e-11 72.4 88 47.7
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.6e-09 67.0 62 58.1
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 2.1e-09 66.6 51 66.7
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 3.7e-09 65.9 45 68.9
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 6.2e-09 65.1 38 84.2
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 8.1e-09 64.7 43 69.8
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.4e-08 63.9 46 69.6
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.8e-08 63.5 49 65.3
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 3.1e-08 62.8 42 71.4


User provided reference genes

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