Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 9.4e-153 543.5 277 100.0
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 7.7e-139 497.3 279 92.5
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.6e-91 340.1 297 63.6
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 4.6e-91 338.6 295 63.1
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.3e-90 336.3 290 64.8
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 2.3e-90 336.3 231 72.7
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 5.1e-90 335.1 248 71.0
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.6e-90 334.7 294 61.6
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 6.6e-90 334.7 250 70.8
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 2.5e-89 332.8 248 71.0
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 4.3e-89 332.0 294 62.9
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 5.6e-89 331.6 293 63.1
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 9.6e-89 330.9 259 64.5
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 1.3e-88 330.5 253 68.4
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 2.8e-88 329.3 232 72.4
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 3.6e-88 328.9 260 68.1
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 3.6e-88 328.9 265 66.8
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.8e-87 326.6 259 66.8
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 2.4e-87 326.2 294 61.9
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 2.4e-87 326.2 261 65.9
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 3.1e-87 325.9 252 65.9
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 3.1e-87 325.9 229 73.4
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 4.0e-87 325.5 258 65.5
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 4.0e-87 325.5 268 64.2
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 4.0e-87 325.5 289 62.3
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 5.3e-87 325.1 229 73.4
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 5.3e-87 325.1 229 73.4
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 5.3e-87 325.1 229 73.4
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.9e-87 324.7 286 61.2
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 6.9e-87 324.7 290 62.4
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 6.9e-87 324.7 270 64.4
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 9.0e-87 324.3 232 72.0
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 9.0e-87 324.3 229 73.4
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.2e-86 323.9 308 60.7
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.2e-86 323.9 233 72.5
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 1.2e-86 323.9 233 71.7
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 2.0e-86 323.2 229 72.1
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 3.4e-86 322.4 231 73.2
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 5.8e-86 321.6 261 65.5
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 7.6e-86 321.2 231 71.0
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 7.6e-86 321.2 232 71.1
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 7.6e-86 321.2 260 66.5
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 9.9e-86 320.9 290 60.7
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.3e-85 320.5 275 64.0
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.7e-85 320.1 252 66.3
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.7e-85 320.1 292 62.0
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.2e-85 319.7 292 62.0
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.2e-85 319.7 292 62.0
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 2.9e-85 319.3 288 62.2
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 3.8e-85 318.9 254 66.1
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 6.4e-85 318.2 232 69.8
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 8.4e-85 317.8 242 69.8
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 1.1e-84 317.4 232 70.7
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 1.1e-84 317.4 249 68.7
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.9e-84 316.6 249 68.3
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 1.9e-84 316.6 255 63.9
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 5.4e-84 315.1 231 69.3
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 5.4e-84 315.1 244 68.9
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 7.1e-84 314.7 248 66.1
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 1.2e-83 313.9 255 65.1
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 2.7e-83 312.8 231 70.6
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 2.7e-83 312.8 289 58.8
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 4.6e-83 312.0 266 63.2
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 4.6e-83 312.0 275 62.9
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 6.0e-83 311.6 232 69.8
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 7.9e-83 311.2 265 63.8
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.0e-82 310.8 235 68.1
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 1.3e-82 310.5 268 64.2
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.3e-82 310.5 269 62.8
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.0e-82 309.3 232 69.4
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 3.0e-82 309.3 232 69.4
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 8.7e-82 307.8 292 59.2
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.5e-81 307.0 286 58.0
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.9e-81 306.6 233 68.7
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.9e-81 306.6 231 68.4
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 2.5e-81 306.2 220 71.4
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 3.3e-81 305.8 280 60.7
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 4.3e-81 305.4 330 52.7
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 4.3e-81 305.4 219 71.2
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 9.6e-81 304.3 248 65.7
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 1.3e-80 303.9 296 57.8
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 3.6e-80 302.4 291 58.4
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 3.6e-80 302.4 291 58.4
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 3.6e-80 302.4 254 61.8
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 6.2e-80 301.6 291 58.4
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 6.2e-80 301.6 268 63.1
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 1.1e-79 300.8 217 71.0
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 1.4e-79 300.4 233 68.2
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.8e-79 300.1 227 68.7
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 3.1e-79 299.3 267 61.8
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 3.1e-79 299.3 246 63.8
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 3.1e-79 299.3 248 63.7
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 5.3e-79 298.5 292 57.5
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 5.3e-79 298.5 292 57.5
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 6.9e-79 298.1 268 59.3
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 1.2e-78 297.4 219 68.9
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.2e-78 297.4 285 56.1
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 3.4e-78 295.8 255 60.8
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 7.6e-78 294.7 266 59.4
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 9.9e-78 294.3 217 68.7
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.3e-77 293.9 284 57.7
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 2.2e-77 293.1 289 56.4
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 4.9e-77 292.0 266 59.0
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 6.4e-77 291.6 230 66.5
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 1.1e-76 290.8 267 58.1
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 2.4e-76 289.7 230 64.8
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 2.4e-76 289.7 258 62.0
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 2.4e-76 289.7 258 61.6
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 4.2e-76 288.9 230 64.3
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 5.5e-76 288.5 218 67.0
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 2.7e-75 286.2 288 55.9
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 2.7e-75 286.2 231 64.5
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 6.0e-75 285.0 258 60.9
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 1.3e-74 283.9 272 57.4
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 2.3e-74 283.1 211 68.7
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 3.0e-74 282.7 230 63.5
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 6.7e-74 281.6 230 62.6
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 8.7e-74 281.2 219 66.7
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 1.9e-73 280.0 289 56.1
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 4.8e-72 275.4 208 67.8
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 6.2e-72 275.0 203 69.0
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 5.3e-71 271.9 202 68.3
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 9.0e-71 271.2 246 60.2
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 7.9e-67 258.1 232 59.5
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.3e-66 257.3 248 60.9
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 1.9e-65 253.4 224 60.7
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 4.8e-64 248.8 217 62.7
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 4.8e-64 248.8 230 58.3
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 2.4e-63 246.5 229 57.6
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.0e-61 241.1 228 58.3
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 1.1e-60 237.7 221 58.8
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 7.2e-60 235.0 251 52.2
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 3.6e-59 232.6 234 54.7
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.5e-57 227.3 164 70.1
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 9.7e-57 224.6 183 62.3
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 3.2e-52 209.5 178 60.1
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 6.1e-51 205.3 236 46.6
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.3e-50 203.4 143 69.9
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 3.3e-49 199.5 235 47.7
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.1e-39 166.0 155 56.8
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 2.5e-36 156.8 180 51.7
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 1.0e-34 151.4 111 64.9
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 3.3e-33 146.4 126 59.5
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.1e-31 139.8 129 61.2
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 1.6e-27 127.5 111 57.7
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 8.0e-27 125.2 258 33.7
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 2.8e-24 116.7 132 52.3
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.1e-19 99.0 117 53.0
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 8.0e-19 98.6 230 30.9
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 3.0e-18 96.7 151 43.7
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 9.2e-15 85.1 63 61.9
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 1.5e-09 67.8 238 29.0
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 2.6e-09 67.0 55 60.0
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 4.4e-09 66.2 204 29.4
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 7.5e-09 65.5 51 66.7
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 7.5e-09 65.5 162 32.7
CAN.G982.7 Capsicum annuum HOM05D000764 ORTHO05D002819 6.4e-08 62.4 213 27.7
Peaxi162Scf00017g03138 Petunia axillaris HOM05D000764 ORTHO05D002819 6.4e-08 62.4 187 25.7
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 6.4e-08 62.4 213 26.3
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 8.3e-08 62.0 228 25.9
Ciclev10021818m.g Citrus clementina HOM05D000764 ORTHO05D002819 1.1e-07 61.6 230 27.0
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 1.1e-07 61.6 213 25.8
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 1.4e-07 61.2 213 25.8
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 1.8e-07 60.8 193 27.5
MELO3C017270.2 Cucumis melo HOM05D000764 ORTHO05D002819 2.4e-07 60.5 230 26.1
CsaV3_1G003070 Cucumis sativus L. HOM05D000764 ORTHO05D002819 2.4e-07 60.5 230 26.5
Dinv09272 Davidia involucrata HOM05D004634 ORTHO05D005502 2.4e-07 60.5 43 69.8
ClCG06G015190 Citrullus lanatus HOM05D000764 ORTHO05D002819 4.1e-07 59.7 196 26.5
Nitab4.5_0004342g0070 Nicotiana tabacum HOM05D000764 ORTHO05D002819 7.0e-07 58.9 238 25.2
QL10p022070 Quercus lobata HOM05D000764 ORTHO05D002819 1.2e-06 58.2 233 25.8
TPR.G23891 Trifolium pratense HOM05D000764 ORTHO05D002819 1.2e-06 58.2 231 27.7
AT5G23040 Arabidopsis thaliana HOM05D000764 ORTHO05D002819 1.6e-06 57.8 198 27.8
BcaC09g49683 Brassica carinata HOM05D000764 ORTHO05D002006 1.6e-06 57.8 198 27.8
C01p33980 Brassica napus HOM05D000764 ORTHO05D002006 1.6e-06 57.8 198 27.8
BolC1t03367H Brassica oleracea HOM05D000764 ORTHO05D002006 1.6e-06 57.8 198 27.8
BcaC06g33192 Brassica carinata HOM05D000764 ORTHO05D002819 2.0e-06 57.4 198 28.3
Carub.0006s2082 Capsella rubella HOM05D000764 ORTHO05D002819 2.0e-06 57.4 169 29.0
Pp3c15_20170 Physcomitrium patens HOM05D000764 ORTHO05D002819 2.7e-06 57.0 211 27.5
MD06G1208500 Malus domestica HOM05D000764 ORTHO05D002819 4.6e-06 56.2 205 27.3
Nitab4.5_0000646g0170 Nicotiana tabacum HOM05D000764 ORTHO05D002819 4.6e-06 56.2 240 25.0
Oeu014430.1 Olea europaea HOM05D000764 ORTHO05D002819 4.6e-06 56.2 195 27.7


User provided reference genes

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