Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.4e-45 186.0 99 100.0
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.3e-35 152.9 97 78.4
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 2.8e-35 151.8 97 77.3
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 6.3e-35 150.6 96 80.2
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.4e-34 149.4 96 79.2
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 1.2e-33 146.4 96 76.0
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.7e-33 145.2 97 76.3
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 3.5e-33 144.8 95 75.8
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.5e-33 144.4 96 76.0
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 5.9e-33 144.1 97 77.3
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 5.9e-33 144.1 96 76.0
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 5.9e-33 144.1 96 76.0
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 7.8e-33 143.7 96 76.0
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 7.8e-33 143.7 95 75.8
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.0e-32 143.3 95 75.8
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.3e-32 142.9 96 74.0
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 1.7e-32 142.5 96 75.0
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.3e-32 142.1 96 74.0
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 2.9e-32 141.7 95 73.7
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 2.9e-32 141.7 95 73.7
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 2.9e-32 141.7 95 73.7
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 3.8e-32 141.4 96 72.9
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 3.8e-32 141.4 96 75.0
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 5.0e-32 141.0 96 72.9
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 5.0e-32 141.0 97 73.2
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 5.0e-32 141.0 95 74.7
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 5.0e-32 141.0 95 74.7
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 6.6e-32 140.6 97 74.2
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 6.6e-32 140.6 96 74.0
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 6.6e-32 140.6 95 73.7
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 8.6e-32 140.2 95 74.7
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 8.6e-32 140.2 95 74.7
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 1.1e-31 139.8 97 72.2
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.1e-31 139.8 97 74.2
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 1.9e-31 139.0 95 73.7
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.9e-31 139.0 95 71.6
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 2.5e-31 138.7 95 71.6
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 2.5e-31 138.7 95 72.6
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 3.3e-31 138.3 96 72.9
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.3e-31 138.3 95 72.6
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 4.3e-31 137.9 94 73.4
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 5.6e-31 137.5 96 72.9
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 5.6e-31 137.5 95 71.6
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 9.5e-31 136.7 96 70.8
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 9.5e-31 136.7 95 72.6
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 1.2e-30 136.3 95 71.6
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.2e-30 136.3 95 70.5
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.6e-30 136.0 95 71.6
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.6e-30 136.0 95 70.5
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 2.1e-30 135.6 95 71.6
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 2.1e-30 135.6 95 72.6
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 2.1e-30 135.6 95 72.6
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 2.1e-30 135.6 95 71.6
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 2.1e-30 135.6 95 69.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.1e-30 135.6 95 69.5
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 2.8e-30 135.2 96 70.8
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.8e-30 135.2 96 70.8
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 2.8e-30 135.2 70 97.1
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.8e-30 135.2 95 71.6
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 2.8e-30 135.2 95 71.6
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 2.8e-30 135.2 96 70.8
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 3.6e-30 134.8 96 69.8
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 3.6e-30 134.8 97 70.1
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 3.6e-30 134.8 96 69.8
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 4.7e-30 134.4 95 70.5
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 4.7e-30 134.4 95 71.6
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 6.1e-30 134.0 96 69.8
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 6.1e-30 134.0 97 71.1
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 6.1e-30 134.0 94 70.2
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 6.1e-30 134.0 95 68.4
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 8.0e-30 133.7 96 70.8
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 8.0e-30 133.7 96 70.8
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 8.0e-30 133.7 97 75.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 8.0e-30 133.7 97 75.3
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 8.0e-30 133.7 97 75.3
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 8.0e-30 133.7 96 69.8
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-29 132.5 96 70.8
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.8e-29 132.5 96 70.8
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.8e-29 132.5 96 70.8
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.8e-29 132.5 96 70.8
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 2.3e-29 132.1 96 69.8
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 2.3e-29 132.1 96 69.8
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.3e-29 132.1 97 74.2
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 2.3e-29 132.1 97 74.2
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 2.3e-29 132.1 97 74.2
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 3.0e-29 131.7 96 68.8
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 4.0e-29 131.3 96 69.8
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 4.0e-29 131.3 96 67.7
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 4.0e-29 131.3 95 69.5
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 5.2e-29 131.0 95 70.5
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 6.8e-29 130.6 96 68.8
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 6.8e-29 130.6 96 68.8
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 6.8e-29 130.6 96 68.8
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 8.9e-29 130.2 96 67.7
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 8.9e-29 130.2 92 71.7
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.2e-28 129.8 95 72.6
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 2.0e-28 129.0 96 68.8
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 3.4e-28 128.3 96 69.8
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 3.4e-28 128.3 95 71.6
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 3.4e-28 128.3 97 69.1
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 4.4e-28 127.9 96 67.7
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 5.7e-28 127.5 92 70.7
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 5.7e-28 127.5 95 67.4
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 5.7e-28 127.5 94 67.0
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 7.5e-28 127.1 96 67.7
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 7.5e-28 127.1 96 67.7
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.3e-27 126.3 94 68.1
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 1.7e-27 125.9 96 70.8
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 2.2e-27 125.6 95 67.4
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.9e-27 125.2 96 66.7
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 2.9e-27 125.2 97 63.9
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 2.9e-27 125.2 94 69.1
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 2.9e-27 125.2 94 69.1
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 4.9e-27 124.4 96 69.8
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 8.3e-27 123.6 95 66.3
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 8.3e-27 123.6 96 69.8
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.4e-26 122.9 95 66.3
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 5.4e-26 120.9 95 63.2
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 5.4e-26 120.9 97 61.9
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 7.0e-26 120.6 96 67.7
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 7.0e-26 120.6 96 67.7
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 1.6e-25 119.4 95 64.2
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.0e-24 116.7 94 61.7
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.0e-21 104.8 100 62.0
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.0e-21 104.8 100 62.0
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.5e-20 102.8 88 61.4
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 2.6e-20 102.1 89 59.6
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 5.8e-20 100.9 69 65.2
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 7.5e-20 100.5 72 65.3
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 3.2e-18 95.1 156 40.4
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 4.1e-18 94.7 70 62.9
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 6.0e-17 90.9 68 63.2
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 6.0e-17 90.9 85 64.7
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 3.9e-16 88.2 68 58.8
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 6.6e-16 87.4 66 62.1
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 7.3e-15 84.0 68 55.9
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 9.5e-15 83.6 68 55.9
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.6e-14 82.8 76 59.2
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.6e-14 82.8 83 54.2
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 6.8e-13 77.4 96 50.0
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 8.9e-13 77.0 95 50.5
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 2.9e-11 72.0 59 62.7
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 1.4e-10 69.7 62 51.6
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 3.0e-08 62.0 85 49.4
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 3.0e-08 62.0 54 57.4
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.7e-06 54.7 99 35.4


User provided reference genes

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