Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.4e-247 857.8 419 100.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 2.7e-167 592.4 420 67.9
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 1.2e-162 577.0 420 67.4
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 3.7e-161 572.0 418 65.6
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 9.2e-160 567.4 421 65.1
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 9.2e-160 567.4 417 66.2
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.0e-159 566.2 425 66.8
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 6.0e-159 564.7 421 67.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.3e-158 563.5 426 65.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.7e-158 563.1 425 66.4
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 6.6e-158 561.2 424 66.5
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.5e-157 560.1 418 62.7
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 3.3e-157 558.9 423 64.8
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 3.6e-156 555.4 427 63.2
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 6.2e-156 554.7 417 63.8
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.4e-155 553.5 423 64.8
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.8e-155 553.1 422 63.3
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.8e-155 553.1 424 64.6
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 3.1e-155 552.4 433 63.5
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 6.8e-155 551.2 420 64.5
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.2e-154 550.4 421 63.4
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.5e-154 550.1 420 63.3
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 2.0e-154 549.7 433 64.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 5.8e-154 548.1 426 64.6
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 2.9e-153 545.8 421 63.2
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.9e-153 545.8 426 62.9
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 3.7e-153 545.4 428 61.0
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 4.9e-153 545.0 420 63.8
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 8.3e-153 544.3 418 62.7
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.1e-152 543.9 433 62.8
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.1e-152 543.9 416 63.9
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.4e-152 543.5 418 63.9
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 2.4e-152 542.7 420 65.0
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 3.2e-152 542.3 416 63.0
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 4.1e-152 542.0 412 63.3
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.1e-152 542.0 418 63.6
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 5.4e-152 541.6 422 64.5
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 5.4e-152 541.6 418 62.7
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 5.4e-152 541.6 429 63.6
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 7.1e-152 541.2 421 62.9
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 9.2e-152 540.8 422 64.2
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.2e-151 540.4 422 64.5
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 1.2e-151 540.4 420 63.6
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 1.2e-151 540.4 424 63.7
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.2e-151 540.4 409 65.8
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.6e-151 540.0 422 64.2
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 2.1e-151 539.7 421 63.7
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 4.6e-151 538.5 417 61.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 6.0e-151 538.1 419 62.3
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 7.8e-151 537.7 422 64.0
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 7.8e-151 537.7 420 64.0
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.0e-150 537.3 422 63.0
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.7e-150 536.6 417 64.3
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.7e-150 536.6 418 62.9
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 5.6e-149 531.6 434 61.8
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.2e-148 530.4 418 61.7
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.8e-148 529.3 406 63.1
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 6.2e-148 528.1 419 61.8
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 6.2e-148 528.1 427 60.7
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.4e-147 526.9 416 61.5
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 2.3e-147 526.2 421 62.0
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 2.3e-147 526.2 383 67.9
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 4.0e-147 525.4 431 59.9
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 3.4e-146 522.3 418 61.7
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 4.4e-146 521.9 421 61.0
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.3e-145 520.4 454 58.4
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 2.2e-145 519.6 432 59.7
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 4.9e-145 518.5 419 60.6
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.9e-144 516.5 348 70.4
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.4e-144 516.2 404 62.4
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.4e-144 516.2 425 62.1
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.2e-144 515.8 393 64.4
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 5.4e-144 515.0 422 60.2
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.7e-143 512.7 390 63.8
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 6.0e-143 511.5 426 60.3
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 7.8e-143 511.1 448 58.3
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 7.8e-143 511.1 417 60.9
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 2.3e-142 509.6 426 60.1
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 3.9e-142 508.8 417 60.9
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-141 506.9 417 61.2
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 3.3e-141 505.8 445 58.2
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.2e-140 503.8 474 55.1
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.1e-139 499.2 417 60.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 4.0e-139 498.8 417 60.4
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.2e-138 497.3 421 59.9
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.3e-137 493.8 480 54.8
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.9e-137 491.9 457 56.5
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.7e-135 486.1 333 69.1
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.7e-134 483.4 419 58.7
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 2.5e-133 479.6 445 56.6
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 6.2e-132 474.9 391 61.6
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.5e-130 470.3 423 57.7
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 2.7e-127 459.5 402 57.2
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.1e-125 454.1 425 55.1
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 8.1e-124 448.0 422 51.2
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.4e-123 446.4 302 69.2
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 2.0e-122 443.4 299 67.6
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.4e-120 437.2 299 68.9
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 3.5e-119 432.6 327 62.7
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 4.6e-119 432.2 417 54.0
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 7.9e-119 431.4 332 63.0
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.8e-118 430.3 316 62.7
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.6e-117 424.5 328 63.1
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.1e-115 421.0 409 51.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.4e-115 420.6 310 65.5
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 2.4e-115 419.9 427 49.4
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.5e-109 400.6 432 49.5
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.2e-108 396.7 419 48.7
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-98 364.4 315 57.8
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.9e-97 359.8 316 54.7
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.3e-92 342.0 290 56.6
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.2e-88 329.7 278 59.4
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.5e-74 283.1 183 66.1
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.5e-72 277.7 439 38.7
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 3.1e-67 260.0 277 51.3
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 6.1e-63 245.7 229 48.9
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 2.7e-58 230.3 371 38.0
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 7.8e-58 228.8 436 36.2
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.3e-57 228.0 575 29.9
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.0e-53 214.2 140 83.6
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 5.4e-43 179.5 251 42.6
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 7.3e-40 169.1 134 62.7
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 6.2e-39 166.0 194 45.9
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.1e-38 163.7 126 62.7
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 6.0e-34 149.4 104 80.8
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.1e-32 145.2 116 63.8
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.2e-31 141.7 118 62.7
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.4e-22 110.9 122 56.6
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 1.7e-17 94.7 106 43.4
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 8.7e-17 92.4 153 39.2
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.8e-14 84.7 59 67.8
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 7.9e-10 69.3 69 56.5
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 2.4e-06 57.8 39 61.5


User provided reference genes

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