Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.1e-90 335.1 169 100.0
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.9e-69 265.0 162 85.8
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.4e-29 133.7 131 55.0
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 2.3e-29 132.9 135 48.9
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 3.1e-29 132.5 113 54.0
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 6.8e-29 131.3 103 55.3
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 6.8e-29 131.3 103 55.3
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 2.0e-28 129.8 154 44.8
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.0e-28 129.8 95 63.2
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 2.6e-28 129.4 162 44.4
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 2.6e-28 129.4 112 54.5
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.6e-28 129.4 133 51.9
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 3.4e-28 129.0 123 50.4
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 3.4e-28 129.0 123 50.4
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 4.4e-28 128.6 78 73.1
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 5.8e-28 128.3 105 64.8
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 5.8e-28 128.3 113 52.2
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 7.5e-28 127.9 159 42.8
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 7.5e-28 127.9 99 55.6
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 7.5e-28 127.9 99 55.6
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.3e-27 127.1 104 56.7
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.7e-27 126.7 77 71.4
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 2.2e-27 126.3 118 52.5
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.9e-27 125.9 122 50.0
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 3.7e-27 125.6 131 47.3
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 3.7e-27 125.6 116 52.6
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 4.9e-27 125.2 119 52.1
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 8.3e-27 124.4 118 51.7
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 8.3e-27 124.4 159 44.7
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.4e-26 123.6 154 46.8
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.4e-26 123.6 76 68.4
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.9e-26 123.2 168 43.5
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.9e-26 123.2 151 45.0
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.4e-26 122.9 121 50.4
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.4e-26 122.9 104 53.8
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.4e-26 122.9 153 44.4
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 4.1e-26 122.1 82 67.1
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 4.1e-26 122.1 118 50.8
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 5.4e-26 121.7 76 69.7
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 5.4e-26 121.7 106 53.8
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 7.0e-26 121.3 77 71.4
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.2e-25 120.6 106 58.5
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 1.2e-25 120.6 76 68.4
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 2.0e-25 119.8 142 45.8
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.0e-25 119.8 77 66.2
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.7e-25 119.4 77 64.9
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 3.5e-25 119.0 76 64.5
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 3.5e-25 119.0 108 53.7
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 6.0e-25 118.2 110 51.8
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 6.0e-25 118.2 159 42.8
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.3e-24 117.1 76 67.1
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.3e-24 117.1 94 56.4
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.3e-24 116.3 84 60.7
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.3e-24 116.3 84 60.7
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 2.3e-24 116.3 76 67.1
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.9e-24 115.5 84 59.5
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 3.9e-24 115.5 81 60.5
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 5.0e-24 115.2 107 53.3
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 1.5e-23 113.6 82 59.8
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.5e-23 113.6 157 40.8
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 1.9e-23 113.2 107 52.3
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.5e-23 112.8 101 52.5
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 2.5e-23 112.8 102 56.9
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 4.3e-23 112.1 156 42.9
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 5.6e-23 111.7 79 62.0
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 9.5e-23 110.9 78 62.8
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 9.5e-23 110.9 107 51.4
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 9.5e-23 110.9 75 64.0
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.2e-22 110.5 164 39.6
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.6e-22 110.2 104 47.1
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.6e-22 110.2 119 47.1
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.1e-22 109.8 162 42.0
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.1e-22 109.8 75 62.7
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 2.1e-22 109.8 76 59.2
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.1e-22 109.8 149 41.6
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 2.8e-22 109.4 122 42.6
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 3.6e-22 109.0 171 39.2
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 3.6e-22 109.0 160 41.2
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 4.7e-22 108.6 107 51.4
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 4.7e-22 108.6 84 61.9
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 8.0e-22 107.8 94 55.3
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.1e-21 107.5 163 39.3
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.1e-21 107.5 168 38.7
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 1.4e-21 107.1 167 38.3
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.4e-21 107.1 155 43.2
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 1.8e-21 106.7 109 53.2
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 2.3e-21 106.3 151 39.7
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 3.1e-21 105.9 74 58.1
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 4.0e-21 105.5 108 52.8
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 5.2e-21 105.1 93 53.8
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 5.2e-21 105.1 77 64.9
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 5.2e-21 105.1 101 49.5
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 5.2e-21 105.1 76 59.2
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 6.8e-21 104.8 82 59.8
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 6.8e-21 104.8 89 55.1
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.2e-20 104.0 103 50.5
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.2e-20 104.0 127 43.3
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.2e-20 104.0 84 57.1
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 1.2e-20 104.0 112 50.0
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.2e-20 104.0 70 64.3
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.5e-20 103.6 124 42.7
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.5e-20 103.6 64 70.3
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.5e-20 103.6 64 70.3
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 2.0e-20 103.2 103 53.4
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.0e-20 103.2 66 63.6
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 4.4e-20 102.1 107 51.4
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 4.4e-20 102.1 109 48.6
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 5.8e-20 101.7 82 53.7
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.8e-20 101.7 65 67.7
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 7.5e-20 101.3 164 37.8
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 9.8e-20 100.9 97 49.5
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 9.8e-20 100.9 77 62.3
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 1.3e-19 100.5 107 51.4
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.3e-19 100.5 90 60.0
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.7e-19 100.1 104 51.9
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.7e-19 100.1 104 51.9
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.7e-19 100.1 75 64.0
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 3.7e-19 99.0 113 42.5
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 3.7e-19 99.0 84 58.3
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 3.7e-19 99.0 104 51.9
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 3.7e-19 99.0 88 52.3
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 6.4e-19 98.2 80 60.0
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 6.4e-19 98.2 94 48.9
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 1.4e-18 97.1 150 38.0
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.4e-18 97.1 91 56.0
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 2.4e-18 96.3 109 48.6
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 3.2e-18 95.9 93 52.7
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 9.2e-18 94.4 165 40.0
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 2.1e-17 93.2 77 50.6
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.0e-16 90.9 88 47.7
CDE12G0350 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.0e-16 89.4 107 47.7
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 3.9e-16 89.0 87 54.0
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 6.6e-16 88.2 71 54.9
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 6.6e-16 88.2 75 54.7
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.5e-15 86.3 84 47.6
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 3.3e-15 85.9 92 47.8
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.3e-15 84.7 84 50.0
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.3e-15 84.7 84 50.0
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 9.5e-15 84.3 96 45.8
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.8e-14 82.8 142 35.9
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 3.6e-14 82.4 73 50.7
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 2.3e-13 79.7 73 50.7
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 2.3e-13 79.7 73 50.7
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 2.3e-08 63.2 77 45.5
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.9e-07 60.1 64 48.4


User provided reference genes

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