Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 6.9e-162 573.9 296 100.0
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.5e-148 527.3 296 91.2
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 1.7e-75 287.0 306 49.7
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 7.6e-68 261.5 307 45.6
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.7e-67 260.4 268 53.7
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.4e-66 257.3 273 51.6
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.4e-66 257.3 286 50.7
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 5.5e-66 255.4 287 51.2
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.2e-65 254.2 272 50.7
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 2.7e-65 253.1 273 51.6
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 4.6e-65 252.3 306 46.7
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 6.0e-65 251.9 274 50.0
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 7.9e-65 251.5 283 49.5
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.3e-64 250.0 272 49.6
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 8.7e-64 248.1 272 49.6
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.1e-63 247.7 272 49.3
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.5e-63 247.3 268 50.7
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 5.7e-63 245.4 271 49.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 9.6e-63 244.6 272 48.5
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 2.1e-62 243.4 307 44.6
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 2.8e-62 243.0 255 51.4
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.8e-62 242.3 272 47.1
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 6.3e-62 241.9 268 48.9
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.1e-61 241.1 272 47.1
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.1e-61 241.1 272 48.2
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-61 241.1 272 48.2
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.1e-61 241.1 274 48.2
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.4e-61 240.7 273 48.0
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.4e-61 240.0 300 44.7
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 2.4e-61 240.0 270 50.0
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.1e-61 239.6 272 48.2
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.1e-61 239.6 273 48.0
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 5.3e-61 238.8 279 48.0
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 3.4e-60 236.1 270 47.0
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.3e-59 234.2 272 46.7
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.8e-59 232.6 273 46.5
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 8.5e-59 231.5 287 46.7
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 3.2e-58 229.6 266 48.9
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 4.2e-58 229.2 272 46.3
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.2e-58 228.4 272 46.3
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 9.3e-58 228.0 283 45.6
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 3.6e-57 226.1 272 49.3
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 4.6e-57 225.7 275 46.2
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 4.6e-57 225.7 272 45.2
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 2.3e-56 223.4 274 47.4
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 2.3e-56 223.4 281 45.9
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 5.1e-56 222.2 272 46.7
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 6.7e-56 221.9 269 45.7
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 6.7e-56 221.9 277 45.1
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.9e-55 220.3 279 45.9
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.9e-55 220.3 308 40.3
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.9e-55 220.3 276 46.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.5e-55 219.9 268 47.8
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.5e-55 219.9 306 42.2
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.3e-54 217.6 249 48.2
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.6e-54 217.2 279 43.4
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 3.7e-54 216.1 305 43.6
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 8.2e-54 214.9 312 42.9
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 5.3e-53 212.2 290 42.8
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 6.9e-53 211.8 327 40.7
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.2e-52 211.1 264 47.3
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.2e-52 211.1 268 46.3
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.2e-52 211.1 271 46.1
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.0e-51 208.0 275 45.5
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.2e-51 206.8 275 43.3
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 2.2e-51 206.8 272 45.6
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 3.8e-51 206.1 260 46.2
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 6.5e-51 205.3 268 45.1
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 8.5e-51 204.9 271 45.8
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-50 204.5 260 45.8
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.5e-50 203.4 272 46.7
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 2.5e-50 203.4 272 42.3
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 2.5e-50 203.4 271 45.8
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 2.5e-50 203.4 272 43.0
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 2.5e-50 203.4 270 43.0
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 5.5e-50 202.2 300 40.7
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 7.2e-50 201.8 272 43.0
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.2e-49 201.1 273 43.2
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 3.6e-49 199.5 273 43.6
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 3.6e-49 199.5 276 43.1
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 3.6e-49 199.5 276 43.1
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 2.3e-48 196.8 270 42.6
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.3e-48 196.8 287 42.9
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 8.8e-48 194.9 270 42.6
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 8.8e-48 194.9 270 41.5
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 8.8e-48 194.9 261 41.4
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.1e-47 194.5 270 43.0
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.5e-47 194.1 268 44.4
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.2e-46 190.3 268 42.5
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 8.2e-46 188.3 268 41.8
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 8.2e-46 188.3 268 41.8
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.1e-45 188.0 265 41.1
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.4e-45 187.6 330 36.4
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.4e-45 187.6 266 42.1
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 3.1e-45 186.4 273 39.9
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.2e-44 184.5 261 41.8
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.5e-44 184.1 303 37.6
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 7.7e-44 181.8 296 38.9
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 6.5e-43 178.7 267 41.6
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 8.5e-43 178.3 193 50.8
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.1e-42 177.9 281 40.6
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 2.5e-42 176.8 269 41.6
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 3.2e-42 176.4 231 44.2
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 7.2e-42 175.3 269 40.1
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.2e-41 174.5 266 40.6
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.6e-41 174.1 231 42.9
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.1e-41 173.7 269 41.6
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.7e-41 173.3 275 38.2
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 3.6e-41 172.9 274 40.1
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 4.7e-41 172.6 267 40.1
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 4.7e-41 172.6 266 40.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.7e-41 172.6 272 38.2
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.8e-40 170.6 262 42.4
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.8e-40 170.6 262 43.5
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.0e-40 169.9 270 41.1
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 3.9e-40 169.5 255 40.4
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 6.7e-40 168.7 255 40.4
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.1e-39 167.9 270 40.0
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 2.4e-37 160.2 270 38.9
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.3e-35 154.5 268 38.1
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 6.5e-35 152.1 271 35.4
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.1e-34 151.4 257 34.6
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.6e-33 147.5 244 40.2
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.4e-32 144.4 233 39.5
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 4.0e-32 142.9 237 39.2
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.5e-31 141.0 270 36.7
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.3e-31 139.8 261 34.1
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.8e-29 134.0 170 45.9
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 2.4e-29 133.7 258 35.7
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 7.7e-28 128.6 189 43.9
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.2e-25 121.3 215 37.7
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.1e-25 120.6 151 46.4
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 8.0e-25 118.6 151 45.0
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 2.3e-24 117.1 151 44.4
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 2.3e-24 117.1 151 44.4
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.2e-23 114.8 143 46.2
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.0e-23 114.0 181 38.7
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 2.6e-23 113.6 236 34.7
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-22 111.3 218 36.7
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 5.4e-21 105.9 138 42.8
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.4e-15 86.7 126 45.2
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 3.1e-13 80.1 187 29.9
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 4.5e-12 76.3 76 51.3
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.6e-09 67.8 199 30.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 4.0e-08 63.2 82 43.9
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 6.8e-08 62.4 62 50.0
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.2e-07 61.6 80 40.0
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-06 58.2 70 47.1
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.7e-06 57.8 69 43.5
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.7e-06 57.8 69 43.5
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 3.7e-06 56.6 65 46.2
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 3.7e-06 56.6 65 46.2
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 3.7e-06 56.6 65 46.2
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 6.4e-06 55.8 54 55.6
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 8.3e-06 55.5 53 50.9


User provided reference genes

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