Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 4.0e-78 294.7 145 100.0
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.1e-55 217.2 135 76.3
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 2.4e-54 215.7 138 71.7
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 6.8e-54 214.2 141 73.0
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.2e-53 213.4 139 71.2
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.4e-53 211.5 138 71.7
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.4e-51 206.5 138 71.0
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.9e-51 206.1 141 69.5
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.9e-51 206.1 138 71.7
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.9e-51 206.1 138 71.7
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.9e-51 206.1 140 68.6
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.9e-51 206.1 139 69.1
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.4e-51 205.7 140 68.6
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.4e-51 205.7 139 69.1
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 3.2e-51 205.3 135 69.6
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 5.4e-51 204.5 137 70.8
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 9.2e-51 203.8 140 68.6
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 9.2e-51 203.8 140 68.6
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.2e-50 203.4 138 70.3
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.2e-50 203.4 141 67.4
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.6e-50 203.0 137 68.6
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.6e-50 203.0 142 66.9
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.6e-50 203.0 140 70.7
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 2.1e-50 202.6 140 67.1
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 2.1e-50 202.6 138 70.3
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 2.7e-50 202.2 140 68.6
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 4.6e-50 201.4 137 68.6
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 6.0e-50 201.1 140 67.1
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 7.8e-50 200.7 137 66.4
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 7.8e-50 200.7 140 68.6
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 7.8e-50 200.7 140 67.9
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.0e-49 200.3 135 68.9
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.0e-49 200.3 140 67.1
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-49 199.9 138 68.8
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.3e-49 199.9 141 66.7
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.3e-49 199.9 140 67.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.3e-49 199.9 139 67.6
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.7e-49 199.5 143 67.8
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 3.0e-49 198.7 138 68.8
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 3.0e-49 198.7 138 69.6
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 3.9e-49 198.4 137 67.2
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 5.1e-49 198.0 138 68.1
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.1e-49 198.0 141 68.1
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 5.1e-49 198.0 140 66.4
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 6.6e-49 197.6 138 68.1
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 6.6e-49 197.6 143 67.1
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 6.6e-49 197.6 140 67.1
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 8.7e-49 197.2 143 65.0
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.1e-48 196.8 137 65.7
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.1e-48 196.8 137 67.9
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.1e-48 196.8 143 66.4
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.5e-48 196.4 138 68.1
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.5e-48 196.4 137 66.4
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.5e-48 196.4 140 67.1
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.5e-48 196.4 143 65.0
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 1.5e-48 196.4 138 64.5
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.9e-48 196.1 138 63.8
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 2.5e-48 195.7 137 66.4
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.5e-48 195.7 138 64.5
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 2.5e-48 195.7 137 67.2
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.3e-48 195.3 143 65.7
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 4.3e-48 194.9 137 65.7
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 5.6e-48 194.5 134 67.2
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 5.6e-48 194.5 140 65.0
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.6e-48 194.5 140 66.4
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 5.6e-48 194.5 140 66.4
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 5.6e-48 194.5 138 64.5
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 7.3e-48 194.1 138 67.4
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 9.6e-48 193.7 137 65.0
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.2e-47 193.4 137 64.2
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 1.2e-47 193.4 140 65.7
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.1e-47 192.6 137 64.2
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 2.1e-47 192.6 138 66.7
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.8e-47 192.2 137 65.0
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 4.7e-47 191.4 137 62.8
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.7e-47 191.4 138 65.9
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.2e-47 191.0 138 65.9
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 6.2e-47 191.0 138 65.9
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 6.2e-47 191.0 138 66.7
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 8.1e-47 190.7 138 65.2
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.4e-46 189.9 138 68.1
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.4e-46 189.9 138 68.1
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.4e-46 189.9 137 62.8
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.8e-46 189.5 157 61.1
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.8e-46 189.5 132 68.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.4e-46 189.1 138 66.7
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 4.0e-46 188.3 137 63.5
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 4.0e-46 188.3 137 63.5
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.2e-46 188.0 127 69.3
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 5.2e-46 188.0 115 74.8
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 6.9e-46 187.6 137 63.5
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 1.2e-45 186.8 137 62.8
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.2e-45 186.8 137 62.0
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.5e-45 186.4 137 62.0
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.6e-45 185.7 138 63.0
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 5.8e-45 184.5 133 66.9
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 5.8e-45 184.5 138 61.6
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 9.9e-45 183.7 134 64.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.7e-44 183.0 118 72.0
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 2.9e-44 182.2 165 55.2
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 2.9e-44 182.2 138 60.9
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 3.8e-44 181.8 123 68.3
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 4.9e-44 181.4 142 61.3
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-43 180.3 138 62.3
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 1.1e-43 180.3 117 69.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.4e-43 179.9 142 60.6
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.9e-43 179.5 138 63.0
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.4e-43 179.1 118 69.5
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 3.2e-43 178.7 138 60.9
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 3.2e-43 178.7 140 61.4
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.2e-43 178.3 134 62.7
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 5.4e-43 177.9 153 56.9
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 7.1e-43 177.6 138 63.0
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 9.3e-43 177.2 123 68.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 7.8e-42 174.1 138 60.1
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.3e-41 173.3 120 68.3
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.7e-41 172.9 138 58.0
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.7e-41 172.9 140 60.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 5.1e-41 171.4 139 61.9
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 8.7e-41 170.6 134 58.2
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.1e-40 170.2 138 58.0
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.5e-40 169.9 138 58.7
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 4.3e-40 168.3 115 69.6
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 5.6e-40 167.9 138 55.8
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 7.3e-40 167.5 138 56.5
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 9.6e-40 167.2 115 68.7
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 9.6e-40 167.2 148 56.8
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 9.6e-40 167.2 138 57.2
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 2.1e-39 166.0 138 56.5
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 9.0e-38 160.6 112 63.4
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.5e-37 159.8 111 64.9
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.1e-35 153.7 125 59.2
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.1e-35 153.7 125 59.2
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 9.3e-35 150.6 100 68.0
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 6.0e-34 147.9 114 61.4
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.7e-33 144.4 134 53.0
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.6e-31 139.8 138 54.3
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 3.4e-29 132.1 137 45.3
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 3.8e-28 128.6 138 48.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 4.2e-27 125.2 77 72.7
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 2.3e-25 119.4 99 56.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 3.0e-25 119.0 99 55.6
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-24 116.7 123 48.8
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 3.3e-24 115.5 143 46.2
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 4.3e-24 115.2 93 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 7.4e-24 114.4 136 44.1
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.8e-23 111.7 141 41.1
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.6e-21 105.9 133 42.1
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 9.3e-19 97.4 139 38.1
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.2e-18 97.1 138 37.0
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 7.9e-18 94.4 135 40.0
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.4e-14 83.6 55 63.6
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-14 82.0 57 75.4
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-14 82.0 57 75.4
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-14 82.0 57 75.4
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 4.1e-14 82.0 99 46.5
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.2e-13 80.5 57 73.7
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 1.2e-13 80.5 66 54.5
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.5e-13 80.1 92 43.5
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 2.0e-13 79.7 59 59.3
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 5.9e-13 78.2 112 40.2
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.2e-12 76.3 118 38.1
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 3.8e-12 75.5 122 34.4
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.5e-08 63.5 49 59.2
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 8.2e-07 57.8 32 78.1


User provided reference genes

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