Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.7e-65 252.7 144 100.0
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 7.3e-40 167.5 129 65.1
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.6e-39 166.4 130 76.2
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 3.6e-39 165.2 129 66.7
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 8.1e-39 164.1 126 65.9
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 5.2e-38 161.4 129 65.1
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 2.6e-37 159.1 130 68.5
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 4.4e-37 158.3 129 64.3
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 4.4e-37 158.3 129 61.2
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 7.5e-37 157.5 129 62.0
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.3e-36 156.8 129 63.6
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.9e-36 155.6 129 65.9
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 2.9e-36 155.6 129 62.0
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 3.7e-36 155.2 128 60.9
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.7e-36 155.2 129 67.4
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 8.3e-36 154.1 129 60.5
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 8.3e-36 154.1 129 60.5
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-35 153.3 129 61.2
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-35 153.3 129 61.2
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 7.1e-35 151.0 128 58.6
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 7.1e-35 151.0 130 62.3
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 9.2e-35 150.6 129 59.7
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 1.2e-34 150.2 126 62.7
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.6e-34 149.8 129 62.0
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.6e-34 149.8 129 58.1
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 2.1e-34 149.4 129 59.7
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 2.7e-34 149.1 129 58.1
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 2.7e-34 149.1 129 61.2
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 4.6e-34 148.3 129 59.7
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.0e-34 147.9 129 59.7
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.0e-33 147.1 128 66.4
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 1.0e-33 147.1 129 57.4
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.3e-33 146.7 129 58.9
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.3e-33 146.0 128 60.9
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 2.3e-33 146.0 129 59.7
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 5.1e-33 144.8 129 58.1
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 5.1e-33 144.8 129 59.7
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 5.1e-33 144.8 129 62.8
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 6.6e-33 144.4 129 58.9
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 6.6e-33 144.4 130 60.0
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 6.6e-33 144.4 129 59.7
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 8.6e-33 144.1 129 56.6
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.1e-32 143.7 129 55.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.9e-32 142.9 129 57.4
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 2.5e-32 142.5 129 62.8
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 4.3e-32 141.7 129 58.1
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 4.3e-32 141.7 129 55.8
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 9.5e-32 140.6 129 54.3
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.1e-31 139.4 128 63.3
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 2.8e-31 139.0 129 59.7
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.7e-31 138.3 125 56.8
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 8.1e-31 137.5 126 57.1
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 8.1e-31 137.5 147 58.5
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.1e-30 137.1 129 59.7
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.4e-30 136.7 129 58.1
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.8e-30 136.3 129 55.0
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.8e-30 136.3 114 61.4
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.4e-30 136.0 129 58.9
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.4e-30 136.0 129 58.9
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 3.1e-30 135.6 129 59.7
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 5.2e-30 134.8 129 60.5
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.8e-30 134.4 129 58.1
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.5e-29 133.3 128 57.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.0e-29 132.9 129 59.7
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 2.6e-29 132.5 130 59.2
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 4.4e-29 131.7 129 56.6
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 5.8e-29 131.3 130 55.4
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 7.6e-29 131.0 131 55.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 9.9e-29 130.6 131 53.4
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 9.9e-29 130.6 128 58.6
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.3e-28 130.2 129 58.1
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.3e-28 130.2 129 57.4
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 2.2e-28 129.4 129 56.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 8.4e-28 127.5 130 59.2
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.1e-27 127.1 129 61.2
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.1e-27 127.1 129 61.2
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.9e-27 126.3 106 60.4
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.9e-27 126.3 129 58.9
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.9e-27 126.3 120 54.2
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 3.2e-27 125.6 129 58.1
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 3.2e-27 125.6 129 58.1
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 3.2e-27 125.6 129 58.1
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 4.1e-27 125.2 87 72.4
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.1e-27 125.2 87 72.4
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 4.1e-27 125.2 109 57.8
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 4.1e-27 125.2 129 58.1
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 1.2e-26 123.6 129 58.1
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.6e-26 123.2 129 58.9
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 2.1e-26 122.9 141 48.9
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 3.5e-26 122.1 127 48.8
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 4.6e-26 121.7 129 57.4
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 4.6e-26 121.7 130 55.4
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.3e-25 120.2 129 55.8
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.3e-25 120.2 129 55.8
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.3e-25 120.2 129 57.4
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 3.0e-25 119.0 102 59.8
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 3.0e-25 119.0 125 59.2
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 3.9e-25 118.6 129 55.8
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 5.1e-25 118.2 106 60.4
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 6.6e-25 117.9 147 44.9
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 1.5e-24 116.7 129 55.0
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 4.3e-24 115.2 120 54.2
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 4.3e-24 115.2 108 57.4
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 4.3e-24 115.2 129 48.8
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.2e-23 113.6 125 52.0
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.6e-23 113.2 129 51.9
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.8e-23 112.5 125 51.2
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 2.8e-23 112.5 113 61.1
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 3.6e-23 112.1 129 53.5
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 3.6e-23 112.1 129 53.5
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 6.2e-23 111.3 129 50.4
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 6.2e-23 111.3 121 48.8
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 6.2e-23 111.3 121 48.8
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 8.1e-23 110.9 128 53.1
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.1e-22 110.5 129 49.6
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.1e-22 110.5 129 49.6
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.4e-22 110.2 130 53.8
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.8e-22 109.8 65 81.5
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.4e-22 109.4 125 52.8
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.4e-22 109.4 125 52.8
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.4e-22 109.4 105 51.4
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 2.4e-22 109.4 136 46.3
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 4.0e-22 108.6 104 52.9
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 4.0e-22 108.6 104 52.9
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 4.0e-22 108.6 121 49.6
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.5e-21 106.7 121 47.1
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.5e-21 106.7 125 52.8
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 2.6e-21 105.9 123 51.2
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.4e-21 105.5 121 47.1
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.3e-20 103.6 122 44.3
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.7e-20 103.2 127 49.6
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.7e-20 103.2 112 47.3
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.2e-20 102.8 126 49.2
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 6.4e-20 101.3 126 49.2
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.1e-19 100.5 126 50.0
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.4e-19 100.1 117 45.3
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.9e-19 99.8 126 48.4
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 3.2e-19 99.0 121 49.6
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 3.2e-19 99.0 106 58.5
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 7.1e-19 97.8 90 67.8
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 3.5e-18 95.5 84 53.6
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 4.6e-18 95.1 94 50.0
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.0e-17 94.0 106 55.7
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.9e-17 92.0 131 44.3
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.9e-17 92.0 131 44.3
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.9e-17 92.0 131 44.3
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.9e-17 92.0 131 44.3
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.1e-16 90.5 75 62.7
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 2.8e-15 85.9 80 48.8
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 3.6e-15 85.5 63 66.7
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.1e-14 84.0 124 36.3
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.8e-14 83.2 63 63.5
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 4.0e-14 82.0 126 36.5
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 5.3e-14 81.6 121 39.7
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 9.0e-14 80.9 72 55.6
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 9.0e-14 80.9 136 33.8
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.7e-12 76.6 75 66.7
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.5e-10 68.9 69 55.1
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 3.5e-10 68.9 125 39.2
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 4.6e-10 68.6 80 45.0
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.0e-09 67.4 80 45.0
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.7e-07 58.9 80 43.8
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 3.1e-06 55.8 69 46.4


User provided reference genes

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