Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2136 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 2.3e-48 195.3 100 100.0
MBI17_g08173_MAGBIO Magnolia biondii HOM05D004612 ORTHO05D004940 2.8e-22 108.6 102 62.7
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 1.7e-19 99.4 101 56.4
Gohir.D11G091300 Gossypium hirsutum HOM05D004612 ORTHO05D004940 2.2e-19 99.0 102 54.9
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 2.2e-19 99.0 102 54.9
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 4.9e-19 97.8 101 55.4
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 4.9e-19 97.8 101 55.4
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 6.4e-19 97.4 101 54.5
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 8.4e-19 97.1 102 53.9
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 1.4e-18 96.3 101 55.4
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 1.9e-18 95.9 101 54.5
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 2.4e-18 95.5 101 53.5
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.4e-18 95.5 101 53.5
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.4e-18 95.5 101 53.5
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 2.4e-18 95.5 101 53.5
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 4.2e-18 94.7 101 54.5
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 4.2e-18 94.7 100 54.0
COL.COLO4_12673 Corchorus olitorius HOM05D004612 ORTHO05D004940 5.4e-18 94.4 102 53.9
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 5.4e-18 94.4 101 53.5
ATR0680G383 Amborella trichopoda HOM05D004612 ORTHO05D004940 7.1e-18 94.0 103 53.4
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 1.2e-17 93.2 102 54.9
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.6e-17 92.8 99 52.5
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 2.7e-17 92.0 102 51.0
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 3.5e-17 91.7 101 55.4
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 3.5e-17 91.7 101 50.5
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 3.5e-17 91.7 101 51.5
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 4.6e-17 91.3 100 54.0
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 6.0e-17 90.9 102 51.0
Ah.05g176430 Amaranthus hybridus HOM05D004612 ORTHO05D004940 7.9e-17 90.5 105 48.6
Os04g0682500 Oryza sativa ssp. japonica HOM05D004612 ORTHO05D004940 1.0e-16 90.1 95 53.7
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.3e-16 89.7 101 52.5
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 1.8e-16 89.4 99 53.5
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 2.3e-16 89.0 102 52.0
Nitab4.5_0010110g0020 Nicotiana tabacum HOM05D004612 ORTHO05D004940 2.3e-16 89.0 101 49.5
Psat4g153800 Pisum sativum HOM05D004612 ORTHO05D004940 2.3e-16 89.0 100 50.0
VMungo1127G0482 Vigna mungo HOM05D004612 ORTHO05D004940 2.3e-16 89.0 102 50.0
Aqoxy46s002 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 3.0e-16 88.6 102 49.0
AUR62033332 Chenopodium quinoa HOM05D004612 ORTHO05D004940 3.0e-16 88.6 101 52.5
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 3.0e-16 88.6 100 51.0
Oeu014678.1 Olea europaea HOM05D004612 ORTHO05D004940 3.0e-16 88.6 101 52.5
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 3.0e-16 88.6 102 52.9
TWI59G1187 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 3.9e-16 88.2 101 51.5
CAN.G718.1 Capsicum annuum HOM05D004612 ORTHO05D004940 5.1e-16 87.8 101 50.5
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 5.1e-16 87.8 99 51.5
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 6.7e-16 87.4 100 49.0
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 6.7e-16 87.4 101 51.5
PSO063G2700 Papaver somniferum HOM05D004612 ORTHO05D004940 6.7e-16 87.4 103 47.6
Phvul.011G160800 Phaseolus vulgaris HOM05D004612 ORTHO05D004940 6.7e-16 87.4 102 50.0
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 8.7e-16 87.0 100 52.0
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 8.7e-16 87.0 100 52.0
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 8.7e-16 87.0 102 52.0
Ca_27541_v3 Cicer arietinum L. HOM05D004612 ORTHO05D004940 1.1e-15 86.7 101 50.5
Lj3g0020312 Lotus japonicus HOM05D004612 ORTHO05D004940 1.5e-15 86.3 102 51.0
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 1.5e-15 86.3 100 51.0
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 1.9e-15 85.9 102 47.1
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 2.5e-15 85.5 102 50.0
PSO782G5368 Papaver somniferum HOM05D004612 ORTHO05D004940 2.5e-15 85.5 103 47.6
HPP92_021103 Vanilla planifolia HOM05D004612 ORTHO05D004940 2.5e-15 85.5 101 51.5
Sopen05g028090 Solanum pennellii HOM05D004612 ORTHO05D004940 3.3e-15 85.1 101 50.5
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 4.3e-15 84.7 102 49.0
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 5.6e-15 84.3 100 49.0
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 7.4e-15 84.0 101 48.5
Solyc05g048770.3 Solanum lycopersicum HOM05D004612 ORTHO05D004940 7.4e-15 84.0 101 50.5
DCAR_008600 Daucus carota HOM05D004612 ORTHO05D004940 1.3e-14 83.2 102 52.0
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 1.3e-14 83.2 102 49.0
Zm00001eb433970 Zea mays HOM05D004612 ORTHO05D004940 1.6e-14 82.8 93 52.7
Cc02_g37600 Coffea canephora HOM05D004612 ORTHO05D004940 2.1e-14 82.4 100 49.0
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 3.7e-14 81.6 102 48.0
THA.LOC104801450 Tarenaya hassleriana HOM05D004612 ORTHO05D004940 3.7e-14 81.6 103 48.5
CARHR248760 Cardamine hirsuta HOM05D004612 ORTHO05D004940 4.8e-14 81.3 105 48.6
Medtr8g031580 Medicago truncatula HOM05D004612 ORTHO05D004940 8.1e-14 80.5 101 47.5
Nitab4.5_0002608g0040 Nicotiana tabacum HOM05D004612 ORTHO05D004940 1.1e-13 80.1 102 48.0
Nitab4.5_0010827g0010 Nicotiana tabacum HOM05D004612 ORTHO05D004940 1.1e-13 80.1 102 48.0
AT4G00590 Arabidopsis thaliana HOM05D004612 ORTHO05D004940 1.4e-13 79.7 102 48.0
Sabra14G0058500 Salix brachista HOM05D004612 ORTHO05D004940 1.4e-13 79.7 102 47.1
AL6G52840 Arabidopsis lyrata HOM05D004612 ORTHO05D004940 1.8e-13 79.3 104 47.1
Sp6g00630 Schrenkiella parvula HOM05D004612 ORTHO05D004940 1.8e-13 79.3 102 49.0
BraA09t35721Z Brassica rapa HOM05D004612 ORTHO05D004940 2.4e-13 79.0 102 50.0
Carub.0006s3663 Capsella rubella HOM05D004612 ORTHO05D004940 2.4e-13 79.0 104 46.2
Prupe.8G034000 Prunus persica HOM05D004612 ORTHO05D004940 2.4e-13 79.0 79 55.7
SalBow3G1907 Salvia bowleyana HOM05D004612 ORTHO05D004940 2.4e-13 79.0 98 48.0
MSTRG.17249 Avicennia marina HOM05D004612 ORTHO05D004940 3.1e-13 78.6 99 47.5
BcaB01g02261 Brassica carinata HOM05D004612 ORTHO05D004940 6.9e-13 77.4 102 48.0
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 6.9e-13 77.4 76 56.6
BcaC04g24158 Brassica carinata HOM05D004612 ORTHO05D004940 9.0e-13 77.0 102 49.0
C09p00500 Brassica napus HOM05D004612 ORTHO05D004940 9.0e-13 77.0 102 49.0
BolC9t52984H Brassica oleracea HOM05D004612 ORTHO05D004940 9.0e-13 77.0 102 49.0
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 9.0e-13 77.0 98 48.0
Thhalv10028700m.g Eutrema salsugineum HOM05D004612 ORTHO05D004940 9.0e-13 77.0 102 48.0
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 9.0e-13 77.0 75 57.3
HanXRQChr16g0523031 Helianthus annuus HOM05D004612 ORTHO05D004940 1.2e-12 76.6 100 45.0
A09p00400 Brassica napus HOM05D004612 ORTHO05D004940 1.5e-12 76.3 102 50.0
AUR62004317 Chenopodium quinoa HOM05D004612 ORTHO05D004940 2.6e-12 75.5 79 53.2
unitig_0.g1278 Utricularia gibba HOM05D004612 ORTHO05D004940 3.4e-12 75.1 100 45.0
Atru.chr5.446 Acer truncatum HOM05D004612 ORTHO05D004940 4.5e-12 74.7 91 48.4
SGA_v2.0_scaffold95G28856 Striga asiatica HOM05D004612 ORTHO05D004940 4.5e-12 74.7 99 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1798 Anthoceros agrestis HOM05D004612 ORTHO05D004940 7.6e-12 73.9 100 45.0
EL10Ac1g00526 Beta vulgaris HOM05D004612 ORTHO05D004940 7.6e-12 73.9 79 53.2
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 1.3e-11 73.2 75 54.7
ECA234G1569 Erigeron canadensis HOM05D004612 ORTHO05D004940 1.7e-11 72.8 102 44.1
Lsat_1_v5_gn_4_36480 Lactuca sativa HOM05D004612 ORTHO05D004940 1.7e-11 72.8 86 48.8
Aa31LG5G400 Aethionema arabicum HOM05D004612 ORTHO05D004940 2.2e-11 72.4 116 41.4
Hund16942 Selenicereus undatus HOM05D004612 ORTHO05D004940 1.1e-10 70.1 102 45.1
Peaxi162Scf00246g01122 Petunia axillaris HOM05D004612 ORTHO05D004940 1.4e-10 69.7 78 52.6
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 4.2e-10 68.2 78 48.7
BcaB01g02263 Brassica carinata HOM05D004612 ORTHO05D004940 9.3e-10 67.0 97 45.4
Pp3c10_3850 Physcomitrium patens HOM05D004612 ORTHO05D004940 1.0e-08 63.5 102 42.2
BcaNung05358 Brassica carinata HOM05D004612 ORTHO05D004940 2.3e-08 62.4 78 50.0
CSS0007536 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.3e-08 62.4 73 49.3
HPP92_021084 Vanilla planifolia HOM05D004612 ORTHO05D004940 3.9e-08 61.6 59 54.2
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 5.1e-08 61.2 92 42.4
vmacro13311 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 5.1e-08 61.2 74 48.6
CSS0015544 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.1e-07 60.1 91 42.9
CSS0003938 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.5e-07 59.7 88 43.2
Gorai.005G166700 Gossypium raimondii HOM05D004612 ORTHO05D004940 2.5e-07 58.9 52 55.8
Mapoly0068s0044 Marchantia polymorpha HOM05D004612 ORTHO05D004940 4.3e-07 58.2 106 36.8
vmacro13422 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 1.3e-06 56.6 72 48.6
Oeu004526.1 Olea europaea HOM05D004612 ORTHO05D004940 1.6e-06 56.2 57 52.6
vmacro22088 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.1e-06 55.8 51 58.8
Nitab4.5_0000094g0210 Nicotiana tabacum HOM05D004612 ORTHO05D004940 6.2e-06 54.3 65 49.2


User provided reference genes

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