Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 3.1e-116 421.8 210 100.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 4.1e-76 288.5 254 62.6
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.1e-75 286.2 255 60.4
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 7.8e-75 284.3 227 65.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.7e-74 283.1 250 60.8
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 3.0e-74 282.3 231 63.6
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 5.1e-74 281.6 231 64.5
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 6.6e-74 281.2 236 63.6
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 8.6e-74 280.8 253 61.3
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.5e-73 280.0 231 64.1
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.5e-73 280.0 231 64.5
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.9e-73 279.6 226 64.2
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.5e-73 279.3 226 64.2
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.3e-73 278.5 226 64.2
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 5.6e-73 278.1 249 59.4
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 5.6e-73 278.1 257 59.9
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 5.6e-73 278.1 252 60.3
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.6e-73 278.1 227 64.3
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.6e-73 278.1 231 64.9
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.6e-72 276.6 252 59.5
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.6e-72 276.6 249 61.4
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.1e-72 276.2 257 59.5
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 3.6e-72 275.4 257 59.9
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 3.6e-72 275.4 248 60.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.7e-72 275.0 227 63.0
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 6.2e-72 274.6 249 59.8
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 6.2e-72 274.6 237 61.6
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.1e-71 273.9 231 62.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-71 273.5 250 58.8
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.8e-71 273.1 248 59.3
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.8e-71 273.1 248 59.3
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.8e-71 273.1 257 59.5
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.1e-71 272.3 225 63.1
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 8.9e-71 270.8 248 59.7
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.5e-70 270.0 241 60.6
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.5e-70 270.0 255 58.8
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.0e-70 269.6 230 62.2
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.0e-70 269.6 254 59.1
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.0e-70 269.6 245 59.2
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 2.0e-70 269.6 219 64.4
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.6e-70 269.2 239 59.4
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.6e-70 269.2 235 61.3
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.6e-70 269.2 235 62.6
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.4e-70 268.9 230 62.6
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.4e-70 268.9 232 61.2
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 3.4e-70 268.9 253 57.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 4.4e-70 268.5 236 61.0
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 5.8e-70 268.1 251 58.6
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 5.8e-70 268.1 235 61.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 7.5e-70 267.7 235 60.4
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 7.5e-70 267.7 235 60.4
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 7.5e-70 267.7 235 60.4
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.5e-70 267.7 262 56.1
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 9.9e-70 267.3 231 61.9
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.3e-69 266.9 231 61.9
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.3e-69 266.9 218 64.7
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.3e-69 266.9 233 60.5
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 3.7e-69 265.4 224 61.6
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.7e-69 265.4 237 59.1
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.7e-69 265.4 238 57.6
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 3.7e-69 265.4 237 58.6
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 4.9e-69 265.0 224 62.9
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 4.9e-69 265.0 242 57.0
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 4.9e-69 265.0 235 60.0
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 4.9e-69 265.0 212 66.0
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 4.9e-69 265.0 222 63.5
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 6.4e-69 264.6 219 63.0
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 8.3e-69 264.2 240 57.9
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.1e-68 263.8 221 62.4
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.1e-68 263.8 246 57.3
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.1e-68 263.8 228 61.0
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.1e-68 263.8 235 60.9
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.1e-68 263.8 232 60.8
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.4e-68 263.5 246 56.9
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.9e-68 263.1 237 59.5
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 2.4e-68 262.7 233 60.9
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 2.4e-68 262.7 249 57.8
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 3.2e-68 262.3 241 58.9
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 4.1e-68 261.9 259 56.4
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 4.1e-68 261.9 221 62.0
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 4.1e-68 261.9 223 62.8
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 7.1e-68 261.2 232 59.5
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.1e-68 261.2 234 60.7
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 9.2e-68 260.8 238 58.4
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 9.2e-68 260.8 208 64.9
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.2e-67 260.4 242 58.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-67 260.0 228 61.0
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-67 260.0 228 61.0
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.1e-67 259.6 239 59.4
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 3.5e-67 258.8 238 58.8
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.5e-67 258.8 223 60.5
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 3.5e-67 258.8 237 59.1
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 4.6e-67 258.5 240 57.9
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 6.0e-67 258.1 208 64.4
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 7.8e-67 257.7 237 58.6
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.0e-66 257.3 228 61.4
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.7e-66 256.5 230 58.7
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 5.1e-66 255.0 224 60.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 6.6e-66 254.6 229 59.0
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 6.6e-66 254.6 211 64.9
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 8.6e-66 254.2 233 57.9
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.9e-65 253.1 241 57.3
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.9e-65 253.1 236 58.1
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.5e-65 252.7 233 57.1
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 4.3e-65 251.9 234 57.7
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 5.6e-65 251.5 233 57.9
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 9.6e-65 250.8 241 58.1
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.7e-64 248.4 221 60.2
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 4.7e-64 248.4 237 57.0
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 4.7e-64 248.4 248 54.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.2e-64 248.1 234 57.3
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.1e-63 247.3 234 56.8
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 3.1e-63 245.7 289 50.5
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.2e-62 243.8 240 55.4
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 7.6e-62 241.1 177 68.4
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 6.4e-61 238.0 197 62.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.4e-60 235.0 153 76.5
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.2e-59 233.8 256 51.2
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 7.8e-59 231.1 226 51.3
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-58 229.9 202 60.4
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 5.1e-58 228.4 165 70.9
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.9e-57 226.5 153 73.9
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 5.6e-57 224.9 215 56.7
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.4e-55 220.3 168 67.3
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.0e-54 216.5 221 51.1
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 9.9e-54 214.2 254 45.7
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.4e-52 210.3 172 64.5
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 3.2e-52 209.1 218 52.8
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.2e-51 207.2 225 51.6
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.5e-51 205.7 221 52.9
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 4.6e-51 205.3 200 54.5
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.3e-50 203.8 174 59.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.0e-50 202.6 177 59.9
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.9e-50 202.2 211 50.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.1e-49 200.7 172 57.6
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 3.3e-49 199.1 177 58.8
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.1e-47 192.6 173 58.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 5.3e-47 191.8 157 61.1
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.9e-41 173.3 106 77.4
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.4e-39 167.2 181 56.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.2e-38 164.1 137 63.5
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.5e-38 163.7 119 67.2
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.6e-38 162.9 162 57.4
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 7.6e-38 161.4 210 47.6
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 3.5e-35 152.5 236 38.1
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.1e-31 139.4 136 55.1
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.0e-29 132.1 92 70.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 6.3e-24 115.2 87 65.5
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 9.0e-23 111.3 64 79.7
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 4.5e-22 109.0 87 60.9
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.9e-21 106.3 72 70.8
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.7e-16 89.4 114 46.5
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.6e-11 72.8 75 53.3
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 9.7e-09 64.7 53 64.2
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.7e-08 63.9 80 43.8
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 8.2e-08 61.6 49 65.3


User provided reference genes

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