Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 6.2e-194 680.6 348 100.0
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 9.5e-94 347.8 355 51.0
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 2.0e-91 340.1 353 52.7
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 2.4e-89 333.2 355 51.0
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 1.1e-84 317.8 354 48.6
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 6.2e-77 292.0 355 47.0
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.8e-76 290.4 353 46.2
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 8.9e-76 288.1 354 45.8
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 8.9e-76 288.1 354 43.2
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 8.9e-76 288.1 352 45.5
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 2.0e-75 287.0 355 45.1
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 3.4e-75 286.2 351 43.9
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 4.4e-75 285.8 360 43.9
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 1.3e-74 284.3 354 45.5
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 1.3e-74 284.3 352 44.6
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.7e-74 283.9 352 44.3
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 8.4e-74 281.6 357 44.5
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.1e-73 281.2 352 44.6
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 2.4e-73 280.0 355 44.5
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 2.1e-72 276.9 344 44.5
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 1.7e-71 273.9 321 45.2
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 2.3e-71 273.5 359 42.9
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 3.0e-71 273.1 346 43.4
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 8.7e-71 271.6 355 43.9
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 1.5e-70 270.8 387 41.9
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 1.9e-70 270.4 355 43.1
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 5.6e-70 268.9 347 44.1
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 1.8e-68 263.8 348 42.0
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 5.3e-68 262.3 343 43.7
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 7.6e-67 258.5 342 44.2
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.3e-66 257.7 360 41.1
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 3.8e-66 256.1 391 40.4
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 4.9e-66 255.8 346 42.8
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 1.1e-65 254.6 350 40.3
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 1.1e-65 254.6 345 43.2
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.4e-65 254.2 354 41.8
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 1.4e-65 254.2 342 41.8
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 1.9e-65 253.8 361 40.7
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 1.9e-65 253.8 358 42.7
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 4.2e-65 252.7 358 42.7
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 4.2e-65 252.7 358 41.1
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 5.4e-65 252.3 345 43.8
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 5.4e-65 252.3 380 40.8
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 5.4e-65 252.3 353 41.6
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 7.1e-65 251.9 380 40.8
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.6e-64 250.8 361 41.6
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 2.7e-64 250.0 330 43.0
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 4.6e-64 249.2 346 41.9
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 7.9e-64 248.4 319 44.2
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 7.9e-64 248.4 465 35.3
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 7.9e-64 248.4 353 41.6
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 1.3e-63 247.7 353 41.4
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.7e-63 247.3 356 41.6
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 2.3e-63 246.9 351 40.7
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 2.3e-63 246.9 497 33.2
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 3.0e-63 246.5 373 38.9
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 3.9e-63 246.1 354 41.5
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 1.5e-62 244.2 480 34.2
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 2.5e-62 243.4 255 50.2
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 4.3e-62 242.7 348 40.2
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 7.4e-62 241.9 255 50.6
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 1.6e-61 240.7 343 40.5
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 3.6e-61 239.6 347 39.2
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 6.9e-60 235.3 352 40.3
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 6.9e-60 235.3 352 40.3
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 1.5e-59 234.2 342 40.9
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 3.4e-59 233.0 354 41.0
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 1.3e-58 231.1 353 39.4
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 1.3e-58 231.1 339 40.7
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 1.7e-58 230.7 336 39.9
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 8.4e-58 228.4 338 39.3
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.2e-56 224.6 339 40.1
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.7e-56 223.4 329 41.0
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 3.5e-56 223.0 351 38.2
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 6.0e-56 222.2 342 36.8
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 6.7e-55 218.8 343 36.4
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 1.5e-54 217.6 348 36.5
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 2.5e-54 216.9 343 39.1
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 6.2e-53 212.2 316 41.1
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 2.4e-52 210.3 485 31.5
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 4.0e-52 209.5 346 36.4
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 9.0e-52 208.4 343 38.5
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 2.6e-51 206.8 357 36.1
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 2.6e-51 206.8 337 35.9
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 1.0e-50 204.9 357 35.6
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 3.8e-50 203.0 342 34.5
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 3.2e-49 199.9 343 35.6
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 9.6e-46 188.3 292 40.1
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 1.3e-42 177.9 254 39.8
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.4e-41 174.5 336 35.4
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 1.0e-39 168.3 331 33.5
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 3.0e-39 166.8 170 49.4
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 3.0e-39 166.8 202 42.1
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 9.0e-36 155.2 271 34.7
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.0e-35 154.1 223 38.6
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 6.5e-34 149.1 197 44.7
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 2.5e-33 147.1 238 38.7
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 9.4e-33 145.2 299 34.4
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 2.7e-32 143.7 134 53.7
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.2e-29 134.0 243 35.8
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 8.2e-29 132.1 243 35.4
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.1e-28 130.2 247 36.4
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 1.3e-26 124.8 135 48.9
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 2.9e-26 123.6 349 28.1
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 3.3e-22 110.2 191 37.2
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 9.7e-22 108.6 197 33.5
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 4.8e-21 106.3 197 35.0
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.0e-19 100.9 177 35.0
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.7e-18 97.8 211 36.5
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 2.5e-17 94.0 120 42.5
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.2e-16 91.7 131 42.0
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 1.4e-12 78.2 383 24.5
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 9.1e-12 75.5 201 29.9
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 5.5e-09 66.2 68 44.1
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 5.5e-09 66.2 68 44.1
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.6e-08 64.7 111 34.2
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 2.3e-07 60.8 67 47.8


User provided reference genes

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