Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.3e-88 328.2 148 100.0
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 5.3e-86 320.9 148 96.6
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 1.4e-62 243.0 154 68.8
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.7e-60 236.1 147 73.5
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 5.0e-60 234.6 145 69.0
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 6.5e-60 234.2 147 69.4
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.1e-59 233.4 150 69.3
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 1.1e-59 233.4 147 67.3
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 1.5e-59 233.0 147 66.7
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.5e-59 233.0 150 70.0
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.2e-59 231.9 148 68.9
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 4.2e-59 231.5 147 68.7
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 5.5e-59 231.1 147 68.0
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 7.2e-59 230.7 155 67.1
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 7.2e-59 230.7 147 68.0
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 7.2e-59 230.7 147 67.3
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.6e-58 229.6 148 70.3
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.7e-58 228.8 147 64.6
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 3.6e-58 228.4 144 66.7
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 3.6e-58 228.4 149 67.1
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.6e-58 228.4 145 66.9
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.7e-58 228.0 152 67.8
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 6.1e-58 227.6 153 66.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 6.1e-58 227.6 153 66.7
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 6.1e-58 227.6 140 69.3
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 8.0e-58 227.3 147 66.0
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.4e-57 226.5 147 66.7
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.4e-57 226.5 146 67.1
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.4e-57 226.5 145 66.9
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.8e-57 226.1 145 66.9
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.0e-57 225.3 145 66.9
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 4.0e-57 224.9 162 59.9
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 4.0e-57 224.9 148 67.6
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 4.0e-57 224.9 149 69.1
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 6.7e-57 224.2 146 69.9
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 6.7e-57 224.2 144 67.4
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 8.8e-57 223.8 147 65.3
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.2e-56 223.4 154 64.3
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 3.3e-56 221.9 145 65.5
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 4.4e-56 221.5 148 64.9
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 4.4e-56 221.5 155 61.9
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.4e-56 221.5 145 65.5
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.4e-56 221.5 145 65.5
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 4.4e-56 221.5 123 70.7
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 5.7e-56 221.1 151 65.6
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 5.7e-56 221.1 147 66.7
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.7e-56 221.1 147 63.3
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 7.5e-56 220.7 134 70.9
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 9.7e-56 220.3 143 63.6
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 9.7e-56 220.3 144 62.5
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 9.7e-56 220.3 145 65.5
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.3e-55 219.9 144 65.3
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.3e-55 219.9 153 64.7
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.7e-55 219.5 147 63.9
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 1.7e-55 219.5 149 65.8
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.7e-55 219.5 149 65.8
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 4.8e-55 218.0 156 63.5
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 4.8e-55 218.0 143 67.8
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.1e-54 216.9 122 73.0
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 3.1e-54 215.3 147 63.9
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 3.1e-54 215.3 122 73.0
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 4.1e-54 214.9 122 73.0
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 4.1e-54 214.9 166 60.2
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 4.1e-54 214.9 124 71.8
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 7.0e-54 214.2 147 63.9
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 9.1e-54 213.8 144 63.2
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 2.0e-53 212.6 145 61.4
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.7e-53 212.2 139 65.5
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 3.5e-53 211.8 147 63.9
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 5.9e-53 211.1 144 62.5
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.9e-53 211.1 144 63.9
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 7.7e-53 210.7 159 59.7
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 2.2e-52 209.1 124 69.4
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 2.2e-52 209.1 116 73.3
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 2.9e-52 208.8 123 69.1
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.9e-52 208.8 144 63.2
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.9e-52 208.8 144 63.2
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 3.8e-52 208.4 147 61.2
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 6.5e-52 207.6 144 61.1
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 6.5e-52 207.6 144 61.1
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.1e-51 206.8 144 63.2
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.9e-51 206.1 123 67.5
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 1.9e-51 206.1 144 61.1
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 1.9e-51 206.1 144 61.1
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 2.5e-51 205.7 145 62.1
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 2.5e-51 205.7 145 62.1
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 3.2e-51 205.3 144 60.4
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 4.2e-51 204.9 123 66.7
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 4.2e-51 204.9 122 69.7
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 7.2e-51 204.1 123 66.7
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 7.2e-51 204.1 144 61.1
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 9.4e-51 203.8 144 61.8
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 9.4e-51 203.8 144 61.1
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.2e-50 203.4 147 60.5
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.6e-50 203.0 145 60.7
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 4.7e-50 201.4 145 65.5
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 8.0e-50 200.7 148 60.8
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.0e-49 200.3 152 61.2
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.0e-49 200.3 152 61.2
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 2.3e-49 199.1 116 70.7
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 8.8e-49 197.2 144 59.0
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.2e-48 196.8 143 60.1
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.5e-48 196.4 112 71.4
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 2.6e-48 195.7 113 71.7
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 2.2e-47 192.6 153 60.1
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 1.4e-46 189.9 112 67.9
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 5.4e-46 188.0 112 68.8
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 5.4e-46 188.0 113 68.1
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 5.4e-46 188.0 122 68.0
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 4.5e-45 184.9 180 53.9
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 5.7e-40 167.9 171 48.5
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.2e-39 166.0 129 53.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 5.4e-38 161.4 145 53.1
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 5.4e-38 161.4 126 57.1
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 2.7e-37 159.1 120 60.0
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 3.5e-37 158.7 143 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.8e-34 149.1 146 47.9
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.9e-31 139.0 87 65.5
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.7e-28 129.8 72 75.0
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 8.9e-25 117.5 58 81.0
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 9.8e-24 114.0 59 78.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.3e-20 103.6 124 47.6
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.0e-16 89.7 75 58.7
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.5e-16 87.8 54 68.5
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.3e-15 87.0 74 58.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.7e-15 86.7 80 51.2
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.1e-14 82.0 80 52.5
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 5.4e-14 81.6 113 39.8
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.3e-12 77.0 40 77.5
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.3e-12 77.0 105 37.1
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.3e-12 77.0 59 55.9
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.9e-12 75.5 57 56.1
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.5e-11 72.8 56 55.4
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.5e-11 72.8 56 55.4
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.3e-11 72.4 57 56.1
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 5.6e-11 71.6 71 52.1
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 7.3e-11 71.2 43 62.8
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 2.1e-10 69.7 94 38.3
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 8.9e-09 64.3 57 59.6
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 3.4e-08 62.4 50 54.0
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.4e-06 57.0 102 27.5


User provided reference genes

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