Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 2327.4 1244 100.0
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1284.6 1295 55.6
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1231.9 1282 53.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1215.3 1283 53.5
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1207.6 1274 52.1
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1205.7 1228 54.2
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1187.2 1274 51.6
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1185.6 1260 52.5
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1185.6 1224 52.9
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1181.0 1231 52.0
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1174.5 1282 50.7
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1167.1 1265 51.5
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1166.0 1253 51.2
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1164.8 1185 53.4
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1164.1 1307 50.4
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1164.1 1221 51.4
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1160.2 1247 51.7
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1159.8 1277 50.9
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1157.5 1239 53.1
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1146.0 1283 50.4
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1143.6 1275 50.3
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1143.6 1278 49.8
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1142.1 1215 50.1
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1140.6 1245 50.8
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1140.2 1269 51.3
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1138.3 1224 51.1
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1137.1 1283 49.8
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1136.7 1209 51.5
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1136.3 1188 52.4
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1135.6 1182 52.2
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1133.6 1284 50.2
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1131.3 1288 50.7
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1130.5 1258 49.0
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1130.2 1238 51.2
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1129.0 1229 50.0
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1128.6 1265 50.8
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1124.0 1260 49.1
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1122.1 1283 50.4
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1121.7 1353 47.9
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1121.3 1230 50.0
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1120.5 1200 49.8
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1120.5 1284 49.9
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1119.8 1242 51.7
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1118.2 1252 49.7
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1116.3 1227 51.8
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1116.3 1192 50.3
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1115.9 1240 49.5
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1113.6 1227 50.2
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1111.3 1289 49.5
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1108.6 1271 50.2
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1106.3 1228 49.5
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1101.3 1311 48.7
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1099.3 1286 49.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1097.4 1201 50.3
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1096.3 1274 48.0
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1094.7 1231 48.7
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1089.3 1286 49.5
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1088.9 1189 50.9
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1087.4 1240 49.8
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1087.0 1261 48.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1085.9 1245 48.4
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1082.8 1184 50.7
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1079.3 1249 48.4
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1077.0 1207 50.3
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 2.2e-310 1069.3 1256 47.8
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 1.2e-308 1063.5 1226 50.2
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 2.7e-308 1062.4 1247 48.7
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 3.0e-307 1058.9 1336 46.2
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 3.0e-307 1058.9 1323 47.5
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.7e-307 1057.4 1261 48.5
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 1.8e-304 1049.7 1172 50.9
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.1e-304 1048.9 1257 48.3
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.5e-303 1046.6 1191 48.7
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 2.0e-303 1046.2 1280 47.3
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 3.4e-303 1045.4 1280 47.2
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 1.4e-301 1040.0 1164 50.8
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 4.6e-300 1035.0 1295 46.3
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 7.9e-300 1034.2 1241 48.2
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 3.9e-299 1031.9 1238 47.9
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 6.7e-299 1031.2 1286 46.3
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 4.1e-296 1021.9 1247 46.5
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 9.0e-296 1020.8 1236 47.4
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.4e-295 1018.8 1214 47.0
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 6.5e-294 1014.6 1199 47.8
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 3.9e-291 1005.4 1279 45.2
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 1.9e-290 1003.0 1249 46.8
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 1.3e-289 1000.3 1246 46.7
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 1.6e-289 1000.0 1192 46.5
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 2.8e-289 999.2 1255 46.6
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 2.9e-286 989.2 1201 47.0
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 1.1e-285 987.3 1263 46.2
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 3.2e-285 985.7 1200 47.2
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 3.2e-285 985.7 1200 47.2
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 5.5e-285 984.9 1225 47.5
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 1.2e-284 983.8 1199 47.0
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 5.1e-283 978.4 1073 50.9
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 8.8e-283 977.6 1257 45.1
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 1.7e-278 963.4 1236 45.2
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.4e-275 953.7 1214 46.2
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 6.1e-268 928.3 1235 44.0
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 7.0e-264 914.8 1255 44.6
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 1.5e-258 897.1 1222 43.0
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 6.3e-257 891.7 1253 42.9
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.2e-253 879.4 1241 44.0
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 4.7e-252 875.5 1205 42.8
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 3.6e-244 849.4 1098 47.3
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 8.3e-241 838.2 950 49.5
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.7e-214 750.7 736 55.3
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 3.9e-206 723.0 1096 40.3
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 7.9e-191 672.2 692 52.6
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.8e-163 581.3 1276 33.4
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 5.4e-139 500.0 1200 31.9
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.5e-138 497.3 1174 31.8
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.1e-131 475.7 1205 30.0
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 7.0e-131 473.0 1273 29.3
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.5e-128 465.3 1137 30.3
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 4.7e-127 460.3 542 49.6
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.8e-123 448.4 429 53.6
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.5e-120 438.7 1106 30.4
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.3e-113 414.8 674 40.9
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 5.0e-113 413.7 838 36.8
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 8.6e-113 412.9 447 49.2
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 3.9e-105 387.5 610 39.3
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 7.3e-104 383.3 440 47.5
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 3.3e-88 331.3 1288 25.7
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.1e-70 271.6 1028 26.2
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.9e-64 252.3 1023 25.8
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.8e-55 221.9 248 46.8
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 2.0e-53 215.7 320 40.0
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 6.9e-46 190.7 563 29.3
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 8.5e-44 183.7 539 28.6
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 4.0e-33 148.3 1205 22.2
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.0e-28 133.7 214 37.9
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 3.8e-28 131.7 1097 22.2
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 5.4e-22 111.3 82 62.2
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 8.6e-20 104.0 138 48.6
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.3e-15 87.8 129 41.9
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.3e-15 87.4 96 44.8
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.1e-14 87.0 61 72.1
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 4.1e-14 85.1 70 57.1
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.3e-12 80.1 132 32.6
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.3e-12 79.3 119 39.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 3.3e-11 75.5 52 69.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 3.3e-11 75.5 52 69.2
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 8.0e-10 70.9 117 39.3
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 8.9e-09 67.4 69 53.6
Zm00001eb132650 Zea mays HOM05D004672 ORTHO05D005732 9.8e-08 63.9 59 54.2
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 4.9e-07 61.6 74 37.8
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.4e-06 60.1 84 42.9
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 3.2e-06 58.9 150 29.3


User provided reference genes

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