Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.6e-183 644.4 329 100.0
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.3e-142 509.2 351 78.3
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.1e-86 324.3 246 67.5
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.8e-86 323.6 214 74.8
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.5e-85 320.5 219 73.5
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.5e-85 320.5 213 75.1
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 3.4e-85 319.3 215 74.9
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.8e-85 318.5 219 73.5
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.8e-85 318.5 219 73.5
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.8e-85 318.5 219 73.1
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 7.6e-85 318.2 218 74.3
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.7e-84 317.0 221 72.9
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.7e-84 317.0 219 73.1
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.7e-84 317.0 226 70.8
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 3.8e-84 315.8 216 73.6
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 6.5e-84 315.1 207 76.3
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 6.5e-84 315.1 272 64.0
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 8.4e-84 314.7 221 71.5
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.1e-83 314.3 221 72.4
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.1e-83 314.3 240 67.1
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.1e-83 314.3 215 73.5
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.4e-83 313.9 215 75.8
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.5e-83 313.2 221 72.4
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.2e-83 312.8 215 74.0
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.2e-83 312.4 215 75.3
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.5e-83 312.0 214 74.8
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.1e-83 311.6 215 74.9
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.1e-83 311.6 214 74.3
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.1e-83 311.6 214 74.3
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 9.3e-83 311.2 221 71.9
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 9.3e-83 311.2 277 61.0
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.2e-82 310.8 218 73.9
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.2e-82 310.8 221 70.6
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.6e-82 310.5 220 71.8
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.1e-82 310.1 346 53.2
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 2.7e-82 309.7 221 70.1
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.7e-82 309.7 221 71.0
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.7e-82 309.7 259 63.7
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.5e-82 309.3 263 64.3
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.6e-82 308.9 213 73.2
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 6.0e-82 308.5 213 71.8
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 6.0e-82 308.5 216 71.8
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 7.9e-82 308.1 220 70.9
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.8e-81 307.0 222 71.6
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.8e-81 307.0 216 73.1
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.3e-81 306.6 213 72.3
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 3.0e-81 306.2 220 72.3
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 3.0e-81 306.2 214 72.4
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 3.9e-81 305.8 221 69.7
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.1e-81 305.4 220 70.9
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 8.7e-81 304.7 220 70.9
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.1e-80 304.3 220 70.5
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.5e-80 303.9 220 70.9
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.5e-80 303.9 258 63.2
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.3e-80 302.8 242 65.7
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 4.3e-80 302.4 337 53.7
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 5.7e-80 302.0 218 72.5
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 5.7e-80 302.0 242 65.3
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 5.7e-80 302.0 221 69.7
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 7.4e-80 301.6 220 70.5
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 7.4e-80 301.6 218 71.6
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 9.7e-80 301.2 231 68.0
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.3e-79 300.8 219 68.9
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.6e-79 300.4 218 72.0
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.6e-79 300.4 218 69.7
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.2e-79 300.1 335 55.2
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 2.8e-79 299.7 222 70.3
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.8e-79 299.7 221 70.6
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.8e-79 299.7 221 70.1
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.8e-79 299.7 229 66.4
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 3.7e-79 299.3 213 70.9
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 3.7e-79 299.3 221 70.6
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 3.7e-79 299.3 220 70.9
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.7e-79 299.3 255 63.5
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.7e-79 299.3 231 66.7
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 4.8e-79 298.9 218 70.6
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 6.3e-79 298.5 224 70.5
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 6.3e-79 298.5 224 70.5
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.1e-78 297.7 221 69.7
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.1e-78 297.7 221 69.7
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.1e-78 297.7 222 69.8
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.8e-78 297.0 220 70.0
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.8e-78 297.0 231 66.2
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.4e-78 296.6 225 68.9
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 4.1e-78 295.8 222 69.4
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 5.3e-78 295.4 211 71.1
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 5.3e-78 295.4 237 66.2
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 6.9e-78 295.0 209 71.8
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.9e-78 295.0 255 62.7
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 9.0e-78 294.7 223 68.6
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 9.0e-78 294.7 233 67.0
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.5e-77 293.9 221 68.8
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 3.4e-77 292.7 241 66.0
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.5e-77 292.4 226 66.4
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 5.9e-77 292.0 223 69.1
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.9e-77 292.0 210 69.5
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 5.9e-77 292.0 218 70.2
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 7.6e-77 291.6 223 69.1
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 7.6e-77 291.6 218 69.3
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.0e-76 291.2 237 64.1
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.0e-76 291.2 210 71.0
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.3e-76 290.8 223 69.1
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.7e-76 290.4 241 65.6
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 5.0e-76 288.9 219 67.6
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 5.0e-76 288.9 290 57.2
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.1e-75 287.7 251 63.3
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.4e-75 287.3 219 68.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.9e-75 287.0 218 67.4
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.9e-75 287.0 220 68.6
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.2e-75 286.2 269 59.5
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 3.2e-75 286.2 219 67.6
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 4.2e-75 285.8 223 65.5
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 4.2e-75 285.8 292 56.5
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 5.5e-75 285.4 220 67.7
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 9.4e-75 284.6 220 67.7
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.2e-74 284.3 219 68.5
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.6e-74 283.9 219 68.5
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.1e-72 277.7 285 56.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.3e-71 274.2 219 65.3
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 6.3e-71 271.9 237 62.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 8.2e-71 271.6 242 62.8
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.0e-68 264.6 221 63.3
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 3.8e-68 262.7 177 74.6
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.9e-67 260.4 177 75.1
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.9e-67 260.4 265 57.0
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 6.1e-66 255.4 215 60.9
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.4e-62 244.2 245 54.7
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.4e-62 244.2 245 54.7
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.0e-62 241.9 169 72.8
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.9e-61 238.8 189 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 7.2e-59 231.9 186 64.5
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.0e-58 228.4 204 60.3
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.3e-57 226.9 166 69.9
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 3.1e-54 216.5 193 61.1
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.3e-54 215.7 189 61.9
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 2.2e-52 210.3 323 40.6
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 6.5e-52 208.8 180 59.4
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-51 207.6 172 65.1
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.6e-50 204.1 152 69.1
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 4.7e-50 202.6 185 54.6
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 6.1e-50 202.2 168 63.7
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 8.0e-50 201.8 187 56.1
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 4.8e-47 192.6 154 66.9
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.1e-46 191.4 149 68.5
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.1e-46 189.9 157 65.6
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.8e-41 174.1 163 55.8
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.8e-39 166.8 228 44.7
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 5.4e-30 136.0 241 35.3
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.5e-27 127.1 220 38.2
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 9.8e-24 115.2 68 77.9
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 5.4e-22 109.4 209 36.8
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.6e-21 107.8 198 36.9
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 8.6e-20 102.1 236 30.5
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 3.4e-16 90.1 247 34.0
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 4.3e-11 73.2 200 29.0
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.2e-10 71.6 41 75.6
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 6.8e-09 65.9 55 58.2
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.9e-06 57.8 41 61.0
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.4e-06 57.4 46 58.7
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.4e-06 56.2 55 54.5


User provided reference genes

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