Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.2e-127 459.9 233 100.0
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 4.3e-34 149.1 130 56.9
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.7e-33 147.1 147 52.4
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 4.1e-32 142.5 130 53.1
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 6.9e-32 141.7 129 58.1
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 3.4e-31 139.4 130 54.6
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 7.7e-31 138.3 187 45.5
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 3.8e-30 136.0 120 55.8
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 8.5e-30 134.8 126 53.2
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.1e-29 134.4 118 54.2
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 2.5e-29 133.3 150 44.7
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 2.5e-29 133.3 131 48.9
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 3.2e-29 132.9 125 51.2
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 3.2e-29 132.9 118 53.4
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 5.5e-29 132.1 122 50.0
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 7.2e-29 131.7 148 48.6
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 7.2e-29 131.7 146 50.0
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 9.4e-29 131.3 125 48.8
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.6e-28 130.6 118 55.1
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 2.1e-28 130.2 186 41.9
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 3.6e-28 129.4 130 48.5
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.6e-28 129.4 118 53.4
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 6.1e-28 128.6 141 49.6
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 6.1e-28 128.6 131 51.1
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 7.9e-28 128.3 115 53.0
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.4e-27 127.5 133 50.4
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 1.4e-27 127.5 133 50.4
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.8e-27 127.1 140 48.6
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.8e-27 127.1 133 50.4
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 3.9e-27 125.9 117 54.7
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 3.9e-27 125.9 131 48.9
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 5.1e-27 125.6 127 49.6
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 5.1e-27 125.6 127 49.6
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 5.1e-27 125.6 145 46.9
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 6.7e-27 125.2 139 46.8
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 6.7e-27 125.2 147 42.2
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 8.8e-27 124.8 133 49.6
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 8.8e-27 124.8 137 48.2
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 1.5e-26 124.0 122 53.3
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.5e-26 124.0 127 48.8
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.5e-26 124.0 127 48.0
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.5e-26 124.0 127 48.0
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.5e-26 124.0 125 46.4
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 1.5e-26 124.0 136 44.9
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 1.5e-26 124.0 124 50.0
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.0e-26 123.6 128 48.4
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 2.0e-26 123.6 124 48.4
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 2.6e-26 123.2 120 51.7
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 2.6e-26 123.2 132 49.2
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 2.6e-26 123.2 152 45.4
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 3.3e-26 122.9 147 43.5
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 3.3e-26 122.9 129 48.8
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 4.4e-26 122.5 132 46.2
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 7.4e-26 121.7 119 51.3
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 7.4e-26 121.7 133 48.1
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 7.4e-26 121.7 121 47.9
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 7.4e-26 121.7 133 48.1
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 9.7e-26 121.3 127 49.6
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 1.3e-25 120.9 128 46.1
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.3e-25 120.9 125 49.6
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 1.7e-25 120.6 135 45.2
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 1.7e-25 120.6 146 44.5
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.2e-25 120.2 117 50.4
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 2.8e-25 119.8 121 51.2
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 2.8e-25 119.8 121 51.2
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 3.7e-25 119.4 131 48.9
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 4.8e-25 119.0 122 47.5
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 8.2e-25 118.2 115 51.3
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 1.1e-24 117.9 123 45.5
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 1.1e-24 117.9 123 45.5
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.1e-24 117.9 121 51.2
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 1.4e-24 117.5 123 48.0
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 1.4e-24 117.5 129 47.3
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.4e-24 117.5 115 51.3
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.4e-24 117.5 120 55.0
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 2.4e-24 116.7 122 48.4
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 2.4e-24 116.7 123 46.3
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 3.1e-24 116.3 113 52.2
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 3.1e-24 116.3 151 41.7
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 4.1e-24 115.9 129 45.0
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 5.3e-24 115.5 174 39.1
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 5.3e-24 115.5 117 48.7
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 9.1e-24 114.8 120 46.7
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 2.6e-23 113.2 122 49.2
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 3.4e-23 112.8 109 54.1
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 4.5e-23 112.5 118 48.3
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 7.7e-23 111.7 109 54.1
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 7.7e-23 111.7 131 42.7
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 7.7e-23 111.7 165 38.2
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.0e-22 111.3 108 52.8
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.0e-22 111.3 108 52.8
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 1.3e-22 110.9 142 43.0
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 1.7e-22 110.5 115 47.8
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.9e-21 107.1 119 47.1
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 2.5e-21 106.7 122 45.9
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 3.2e-21 106.3 122 43.4
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 9.4e-21 104.8 114 47.4
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 9.4e-21 104.8 117 42.7
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 2.3e-19 100.1 89 48.3
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.3e-17 94.4 109 41.3
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.7e-17 94.0 110 43.6
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.8e-17 93.2 170 36.5
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.7e-17 92.8 175 36.0
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 3.7e-17 92.8 82 56.1
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 9.1e-16 88.2 160 36.2
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 9.1e-16 88.2 156 33.3
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.0e-15 87.0 88 47.7
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 3.5e-15 86.3 76 55.3
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 4.8e-09 65.9 64 53.1
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 4.8e-09 65.9 58 55.2
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 8.2e-09 65.1 56 55.4
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 5.3e-08 62.4 55 54.5
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 5.3e-08 62.4 64 48.4
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 7.0e-08 62.0 58 50.0
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 7.7e-07 58.5 96 38.5
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 1.3e-06 57.8 96 39.6


User provided reference genes

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