Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.8e-200 701.0 379 100.0
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 7.5e-185 650.6 368 95.9
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 7.8e-134 481.1 372 71.8
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.5e-132 476.9 373 69.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.3e-131 473.8 344 74.1
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.4e-130 470.3 367 71.4
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.8e-130 469.9 339 74.9
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.8e-130 469.9 339 74.9
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.5e-129 466.8 355 72.4
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 4.5e-129 465.3 380 69.2
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.2e-128 463.0 371 70.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 3.8e-128 462.2 375 68.0
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.1e-127 460.7 346 71.4
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.4e-127 460.3 346 73.1
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.9e-127 459.9 370 70.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 4.2e-127 458.8 373 69.4
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 5.4e-127 458.4 366 68.0
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.1e-126 456.4 347 71.5
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 3.5e-126 455.7 338 73.4
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 6.0e-126 454.9 346 70.5
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.0e-125 454.1 369 69.6
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.3e-125 453.8 380 68.4
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.3e-125 453.8 378 64.6
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.8e-125 453.4 338 72.8
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.3e-125 453.0 327 75.2
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 3.0e-125 452.6 372 65.6
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.0e-125 452.6 338 71.9
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 3.9e-125 452.2 344 71.2
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 3.9e-125 452.2 366 69.1
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 5.1e-125 451.8 327 74.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 5.1e-125 451.8 327 74.9
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 8.7e-125 451.1 341 73.0
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 8.7e-125 451.1 358 69.6
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.1e-124 450.7 349 71.3
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.1e-124 450.7 366 68.0
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.1e-124 450.7 370 66.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.9e-124 449.9 341 72.7
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.9e-124 449.9 365 69.9
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.9e-124 449.9 337 72.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.9e-124 449.9 327 73.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.5e-124 449.5 326 75.2
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 4.3e-124 448.7 347 72.3
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 4.3e-124 448.7 365 69.6
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 4.3e-124 448.7 347 72.3
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 4.3e-124 448.7 346 70.2
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 5.6e-124 448.4 359 70.8
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 5.6e-124 448.4 347 72.0
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.6e-124 448.4 368 68.8
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 7.4e-124 448.0 344 70.9
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 7.4e-124 448.0 344 70.9
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 7.4e-124 448.0 330 72.1
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 9.6e-124 447.6 348 71.8
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 9.6e-124 447.6 365 69.3
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 9.6e-124 447.6 348 71.8
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 9.6e-124 447.6 370 67.6
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 1.3e-123 447.2 341 72.4
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-123 447.2 341 72.7
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.3e-123 447.2 354 69.5
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.6e-123 446.8 354 68.6
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-123 446.4 361 69.5
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.1e-123 446.4 364 69.0
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.1e-123 446.4 371 67.7
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.8e-123 446.0 341 72.7
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 2.8e-123 446.0 341 72.4
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 2.8e-123 446.0 341 72.4
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.8e-123 446.0 343 70.6
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 2.8e-123 446.0 341 72.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 2.8e-123 446.0 365 66.8
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 3.7e-123 445.7 365 69.6
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 3.7e-123 445.7 348 70.7
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.7e-123 445.7 341 72.1
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 6.2e-123 444.9 353 69.4
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.2e-123 444.9 343 70.6
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 8.1e-123 444.5 345 69.6
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 8.1e-123 444.5 341 72.1
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 8.1e-123 444.5 343 70.0
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.4e-122 443.7 367 67.3
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-122 443.7 342 70.8
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.8e-122 443.4 325 73.2
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.8e-122 443.4 370 67.8
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.8e-122 443.4 370 67.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 3.1e-122 442.6 375 65.1
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 9.0e-122 441.0 336 69.0
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 2.6e-121 439.5 343 70.0
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 5.8e-121 438.3 355 68.7
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 7.6e-121 438.0 363 66.7
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 9.9e-121 437.6 340 70.3
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.3e-120 437.2 372 66.1
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.3e-120 437.2 379 65.2
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.7e-120 436.8 350 69.7
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.8e-120 435.6 340 69.4
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 4.9e-120 435.3 327 71.3
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 4.9e-120 435.3 343 67.9
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 6.4e-120 434.9 312 75.3
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.1e-119 434.1 358 67.6
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 5.5e-119 431.8 360 66.4
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 7.1e-119 431.4 350 66.9
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 7.1e-119 431.4 369 65.6
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 9.3e-119 431.0 348 67.2
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.1e-118 429.9 345 66.1
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 4.6e-118 428.7 338 69.2
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 4.6e-118 428.7 347 68.6
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.8e-117 426.8 363 64.7
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.1e-117 425.2 345 69.6
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.9e-116 423.3 329 69.3
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 7.4e-116 421.4 375 64.8
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.1e-115 419.9 361 63.4
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 4.8e-115 418.7 332 68.1
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.1e-114 417.5 356 65.2
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 3.1e-114 416.0 323 70.3
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.5e-113 413.7 343 66.5
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 7.6e-113 411.4 368 64.9
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.5e-112 408.3 301 74.1
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 9.3e-111 404.4 301 73.1
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.2e-110 404.1 301 73.1
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 7.6e-105 384.8 359 60.2
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 2.5e-103 379.8 326 63.5
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 3.6e-102 375.9 338 63.9
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.9e-100 370.2 318 67.6
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.9e-100 370.2 375 56.5
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 9.7e-100 367.9 366 57.1
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 8.5e-96 354.8 277 72.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 3.9e-93 345.9 348 56.3
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 6.7e-93 345.1 348 56.6
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 5.7e-92 342.0 243 78.2
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.3e-91 340.9 369 56.9
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.1e-90 336.3 297 59.9
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.1e-86 323.6 245 73.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.8e-85 320.5 241 73.0
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.7e-80 303.9 325 55.4
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 3.8e-80 302.8 332 53.3
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 6.5e-80 302.0 202 74.8
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 6.5e-80 302.0 351 52.7
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 9.4e-79 298.1 366 51.9
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.0e-74 282.0 243 60.9
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.4e-60 236.1 209 62.2
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.2e-54 218.0 266 50.0
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 5.2e-45 186.0 164 57.9
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 2.3e-40 170.6 127 69.3
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 8.1e-38 162.2 146 61.6
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.2e-36 158.3 164 57.3
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 6.6e-32 142.5 89 79.8
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 2.8e-30 137.1 105 63.8
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 6.0e-25 119.4 97 61.9
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 8.7e-24 115.5 125 51.2
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 9.6e-23 112.1 92 55.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.2e-19 100.9 161 49.7
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.1e-18 98.6 80 60.0
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 2.4e-18 97.4 79 59.5
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-17 94.7 78 64.1
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.7e-17 94.0 90 55.6
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.7e-16 91.3 64 71.9
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 3.0e-16 90.5 321 29.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.5e-15 88.2 293 28.3
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.6e-14 84.7 178 39.3
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-14 84.3 78 50.0
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 9.0e-13 79.0 273 31.1
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.1e-10 72.0 49 67.3
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 1.9e-10 71.2 59 61.0
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.3e-10 68.9 49 63.3
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 46 65.2
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 46 65.2
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.0e-08 65.5 82 48.8
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.8e-08 64.7 43 65.1
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-08 64.7 46 63.0
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-08 64.7 51 54.9
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.3e-07 60.5 68 52.9
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.6e-07 59.7 46 56.5
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 7.4e-07 59.3 67 68.7
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.6e-07 58.9 73 46.6
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.6e-07 58.9 73 46.6
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-06 57.4 43 62.8


User provided reference genes

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