Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 2772.3 1345 100.0
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1345.5 1404 51.6
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1307.7 1409 51.0
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1302.3 1394 50.8
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1282.7 1430 50.3
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1274.2 1429 49.6
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1255.4 1424 48.7
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1254.6 1424 48.5
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1248.8 1421 48.6
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1241.9 1405 49.0
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1237.6 1456 47.0
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1227.2 1415 46.9
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1226.8 1428 47.1
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1209.5 1435 46.8
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1209.5 1417 47.4
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1207.2 1405 47.3
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1204.1 1409 46.4
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1202.6 1403 47.4
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1200.3 1414 46.9
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1200.3 1399 47.2
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1200.3 1431 46.8
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1198.7 1396 47.1
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1196.4 1413 46.4
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1193.3 1403 48.0
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1193.3 1403 47.3
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1192.9 1403 48.1
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1192.6 1496 44.8
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1189.9 1409 48.0
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1187.9 1402 47.1
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1186.4 1394 46.0
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1183.3 1391 46.4
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1182.2 1394 46.6
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1181.8 1393 46.7
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1181.4 1399 46.3
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1181.4 1468 45.5
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1179.5 1418 46.0
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1179.5 1415 46.3
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1179.1 1396 47.1
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1177.5 1401 46.5
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1177.2 1414 45.3
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1176.4 1419 45.8
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1176.0 1396 46.6
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1173.3 1405 45.3
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1172.9 1378 46.3
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1171.8 1394 46.3
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1166.4 1402 46.5
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1155.2 1443 44.6
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1153.3 1424 46.0
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1142.9 1414 44.3
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1141.3 1415 45.2
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1128.2 1410 44.3
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1128.2 1389 44.3
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1123.6 1380 44.2
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1123.2 1414 45.3
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1121.7 1383 44.2
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1120.9 1395 46.2
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1120.9 1379 43.8
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1120.1 1392 44.3
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1116.7 1381 44.1
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1116.3 1390 43.6
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1114.0 1370 46.1
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1110.9 1380 44.2
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1109.0 1496 42.8
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1107.8 1376 43.8
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1100.1 1378 44.0
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1097.8 1390 43.5
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1096.6 1404 44.4
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1093.2 1364 45.3
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1091.6 1377 43.6
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1088.6 1382 44.7
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1087.8 1409 43.9
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1077.4 1359 44.8
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.8e-311 1073.2 1134 50.3
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 1.4e-310 1070.1 1372 45.0
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 5.3e-310 1068.1 1199 49.0
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 4.8e-303 1045.0 1389 43.6
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 4.1e-302 1042.0 1352 44.3
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 4.7e-298 1028.5 1476 42.1
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 9.1e-294 1014.2 1182 47.4
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 7.7e-293 1011.1 1402 43.9
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.2e-272 944.1 959 50.9
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 6.4e-271 938.3 986 50.1
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 2.7e-269 932.9 1073 47.2
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 6.8e-265 918.3 1074 46.1
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.5e-264 917.1 1074 46.1
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 4.0e-257 892.5 1004 46.8
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.5e-227 793.5 962 45.9
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.1e-219 768.1 1389 36.1
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.8e-218 762.7 1486 35.2
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.2e-206 723.4 735 50.3
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 5.0e-199 699.5 1513 32.1
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.7e-194 684.5 1490 32.6
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 5.2e-188 662.9 891 43.7
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 4.1e-169 600.1 856 41.4
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.2e-165 588.6 612 49.8
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.5e-163 581.6 599 50.3
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.3e-156 557.8 585 50.1
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 5.2e-156 556.6 806 40.8
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.2e-154 551.2 774 40.4
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 1.1e-153 548.9 1222 32.7
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 1.5e-150 538.5 782 41.8
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 2.6e-147 527.7 1326 31.7
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.9e-145 521.5 583 48.5
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 4.1e-137 493.8 891 36.5
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.8e-114 417.5 664 40.1
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.5e-113 413.7 591 42.6
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 8.2e-85 320.1 397 45.8
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-83 315.8 364 46.7
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 3.0e-79 301.6 313 51.8
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.0e-75 288.9 338 45.9
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 4.1e-68 264.6 432 38.4
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.8e-60 239.2 301 45.2
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 3.5e-59 235.0 1616 23.3
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 1.5e-54 219.5 883 24.3
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 4.1e-52 211.5 333 39.3
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 7.8e-51 207.2 204 51.0
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-48 198.4 259 43.2
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-43 181.0 621 27.1
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 2.5e-41 175.6 194 48.5
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 8.9e-39 167.2 179 49.2
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 3.4e-38 165.2 197 44.7
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 1.0e-34 153.7 226 42.0
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 1.5e-33 149.8 262 40.1
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 3.3e-33 148.7 228 43.0
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.4e-31 143.3 159 44.7
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 4.4e-30 138.3 109 57.8
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 4.1e-28 131.7 232 39.7
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 4.1e-28 131.7 191 40.3
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.9e-26 125.2 164 43.3
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 9.5e-25 120.6 129 48.8
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 6.2e-24 117.9 74 66.2
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.4e-23 116.7 156 42.3
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 3.1e-23 115.5 76 67.1
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 8.9e-23 114.0 261 31.8
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.3e-21 110.2 155 41.3
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 9.2e-20 104.0 112 46.4
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 9.6e-17 94.0 86 48.8
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 8.1e-16 90.9 102 46.1
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 4.0e-15 88.6 167 35.9
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 2.3e-10 72.8 83 47.0
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 7.3e-09 67.8 100 38.0
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 4.8e-08 65.1 56 53.6
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.8e-07 63.2 63 50.8
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 2.4e-07 62.8 56 53.6
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-07 61.6 48 60.4
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 6.9e-07 61.2 177 27.1
SEGI_24481 Sequoiadendron giganteum HOM05D004661 ORTHO05D005827 1.5e-06 60.1 179 28.5
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 7.6e-06 57.8 43 62.8


User provided reference genes

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