Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 6.2e-208 727.2 375 100.0
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 1.1e-151 540.4 346 79.5
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 2.7e-150 535.8 339 78.5
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 5.9e-150 534.6 339 78.8
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 7.7e-150 534.3 348 77.3
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.5e-148 529.3 354 76.6
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 7.2e-148 527.7 336 79.2
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 9.4e-148 527.3 347 76.7
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.2e-147 526.9 349 77.1
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.1e-147 526.2 338 79.3
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.1e-147 526.2 338 79.0
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 2.1e-147 526.2 343 77.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 4.7e-147 525.0 336 77.7
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.0e-146 523.9 336 78.9
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 4.0e-146 521.9 335 77.9
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 4.0e-146 521.9 362 74.6
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 6.8e-146 521.2 351 76.9
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.2e-145 520.4 330 78.5
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 4.4e-145 518.5 350 75.7
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 5.7e-145 518.1 333 78.1
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 7.5e-145 517.7 336 76.2
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 9.8e-145 517.3 335 77.0
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 9.8e-145 517.3 335 77.0
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.3e-144 516.9 351 74.6
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.7e-144 516.5 365 72.3
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 2.2e-144 516.2 351 76.1
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 2.8e-144 515.8 315 81.9
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 4.8e-144 515.0 335 77.6
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 4.8e-144 515.0 335 77.0
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 6.3e-144 514.6 335 75.8
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 6.3e-144 514.6 335 77.0
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 8.3e-144 514.2 348 75.6
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.1e-143 513.8 335 76.1
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.4e-143 512.7 338 77.2
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 3.1e-143 512.3 335 76.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 3.1e-143 512.3 340 76.5
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 5.4e-143 511.5 338 76.0
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 7.0e-143 511.1 355 72.4
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 1.2e-142 510.4 335 75.8
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 1.2e-142 510.4 347 74.6
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.6e-142 510.0 335 75.2
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 3.5e-142 508.8 341 76.5
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 4.5e-142 508.4 355 74.9
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 5.9e-142 508.1 347 74.9
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 7.7e-142 507.7 323 78.9
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.3e-141 506.9 338 76.6
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.7e-141 506.5 340 76.5
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.7e-141 506.5 341 77.1
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 3.8e-141 505.4 342 76.3
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 3.8e-141 505.4 335 77.6
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.5e-140 503.4 354 73.7
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.9e-140 503.1 348 75.9
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.9e-140 503.1 409 65.5
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 3.3e-140 502.3 336 75.6
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 4.2e-140 501.9 317 80.1
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 5.5e-140 501.5 335 75.2
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 7.2e-140 501.1 315 78.1
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 9.5e-140 500.7 340 75.6
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 9.5e-140 500.7 320 79.7
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.2e-139 500.4 362 73.2
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.2e-139 500.4 335 76.7
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.1e-139 499.6 345 75.4
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.1e-139 499.6 336 75.6
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.1e-139 499.6 354 73.2
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 6.1e-139 498.0 335 75.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 6.1e-139 498.0 318 78.0
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 1.0e-138 497.3 346 74.9
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 1.0e-138 497.3 346 74.9
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.3e-138 496.1 313 77.3
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 3.0e-138 495.7 346 74.6
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 4.0e-138 495.4 346 74.6
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 5.2e-138 495.0 337 75.1
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.5e-137 493.4 369 68.8
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.4e-137 491.9 372 69.6
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 9.8e-137 490.7 311 79.1
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 1.7e-136 490.0 311 78.1
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 4.9e-136 488.4 311 77.5
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.1e-135 487.3 358 71.5
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.8e-131 472.6 314 75.2
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 4.7e-131 471.9 313 76.4
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 9.8e-129 464.2 404 63.6
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 2.9e-128 462.6 305 76.4
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 5.4e-127 458.4 351 69.2
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 9.2e-127 457.6 308 75.3
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.6e-126 456.8 330 70.9
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 3.5e-126 455.7 346 72.0
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.5e-126 455.7 287 79.8
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 3.0e-125 452.6 335 69.3
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.2e-123 447.2 372 65.3
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.1e-122 444.1 330 69.7
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 4.4e-121 438.7 292 77.7
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 6.0e-118 428.3 296 72.0
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.1e-117 425.2 401 59.6
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 2.5e-116 422.9 287 72.8
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 7.3e-116 421.4 298 72.1
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 9.5e-116 421.0 313 69.3
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 6.2e-115 418.3 349 67.6
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.1e-111 407.5 335 64.5
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.3e-109 400.6 344 62.8
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 3.9e-109 399.1 321 62.9
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 8.9e-106 387.9 314 64.3
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 7.6e-105 384.8 240 81.7
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.4e-103 380.6 255 74.1
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.9e-95 353.6 221 79.2
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.8e-88 329.3 217 73.3
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 6.0e-86 322.0 303 57.8
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.4e-82 310.8 192 82.3
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.4e-82 310.1 230 68.3
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.2e-81 307.8 312 51.6
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 5.8e-81 305.4 308 54.2
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.9e-79 300.4 187 81.3
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 6.0e-78 295.4 220 69.1
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 6.1e-70 268.9 212 63.2
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 1.3e-67 261.2 167 80.8
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.0e-61 241.5 355 42.5
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.5e-57 227.6 292 46.6
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.9e-55 220.7 151 71.5
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 5.3e-50 202.6 160 64.4
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.7e-43 181.0 160 58.8
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 8.2e-43 178.7 242 49.2
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.4e-42 177.2 280 37.9
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.1e-38 164.1 122 67.2
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 2.0e-36 157.5 266 39.5
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.1e-34 149.8 265 39.6
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.7e-33 147.1 123 59.3
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 2.5e-31 140.6 243 41.2
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 7.2e-31 139.0 103 61.2
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.0e-29 133.3 88 72.7
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 6.3e-27 125.9 101 68.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.5e-23 114.8 81 71.6
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.0e-21 108.6 74 68.9
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 5.2e-21 106.3 124 51.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.3e-19 99.0 59 88.1
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.7e-17 94.0 63 74.6
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.9e-17 92.8 88 61.4
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 7.8e-17 92.4 113 46.9
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.3e-13 80.9 54 61.1
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.0e-13 80.1 62 59.7
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 3.4e-12 77.0 55 67.3
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.9e-08 63.5 41 70.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.3e-07 60.1 52 57.7
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 5.6e-07 59.7 49 59.2


User provided reference genes

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